BAC Information

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BAC

Clone NameMSMg01-415M05
Chromosome3 (Build37)
Map Location 141,118,926 - 141,257,112
singlet/doubletdoublet
Overlap geneUnc5c, LOC100039923
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415M05.T7 (MSMg01no415_m05.b1)MSMg01-415M05.TJ (MSMg01no415_m05.g1)
ACCAG511744AG511745
length719726
length of high quality
(start - end)
191 (117 - 307)239 (71 - 309)
definitionCHROMAT_FILE: MSMg01no415_m05.b1 PHD_FILE: MSMg01no415_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:14 2005CHROMAT_FILE: MSMg01no415_m05.g1 PHD_FILE: MSMg01no415_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,118,926 - 141,119,112)(141,256,874 - 141,257,112)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATCGATCCGCGGAATTCCA
AACTTACTATAATAGGCATATTTTTGTAAGATAAAGTAGAGAGCATTTTC
AACAGTGAGTCTGTACATATATTTAGGAAAAAAATGTAGTTAAAAACACC
AAACACACATAACTGACTTAGGCTGCATGTCATAAAATCCTCAGAAATTA
TTGTTTTGTCTATTTTAAAAATATTTCTTAGTTATATTTTCTGTGTCAGG
TACAGTTAAGGGTTATGAAAAGCAAATAGAATGGCTATGTGTGCTGGTGA
GTCATTATTTTTTTTTTTGAATGCAACATTTTAGTCCCAATGAATGCCAG
TAATCCTAACAATCTATGTGTCCCTTTCACCCATTGAATCTTATTTTTAA
TTCTTTAATGGCTTTAATTCAGTTGACGGTACTTTATTGCTGCAAGTAGC
TTTGCGGGGTTACCTAGCTTATTCCTTAACTACATTGCGCATATTTAACA
ATACGATGGTTTTCATCCTATATCCTGGATTATCAACCTCCATCCCATTT
GGTACTCTTGAACCTGCTCCCTTCGCTCGTTTTCCGTTTATTGCTTGTTA
CATGCGTACTCTCACTGCTTTTTCTCTTCGATGATCTTTTTTTTCTTCTG
ATGGTCACCTCGGCTCTCTCCTTCACCTTTTGTATCTTGCCCCCCCTTTT
TCTTTTCCCCCCCACCTCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTCCAGAGTAAGTGCCACTAATACACTAC
AAACCCAAGTCCTTGAAATGCAAAGCGTGCCTCCTCACCCACTGTTAACC
CCAAGCCCAGGGACTAGTTTTTCTTTCTTCTTTCCTTGGCATGTATTCTT
CAGACAGTCCTGAGTGAGGCCCATTAGTGCCTGTGCAGCACCAAGTGTTT
CATCTCTATCAGAAAAATGACTTGCAAATGGAGATTTTTGCCCCAGTGGA
AAGTTAATCTTTTGTTATGAATAGTACAGTGAGCGCTGAATGTGCATCTA
GTGTCATCATTTGCTTGAAGTGTGGCTCCCCACCACACAAAGCCCTTTAA
CCTACATTTTGTTATTCTCGTTATTAGTAACCTCCAATGTTTGACATCTC
CCACTTGTTGCATAGTGATTTTCCCATTTAGAGAGCAGGAAGAACCATCC
TCTTGATGACCATTTTGTAATTCTCCCTGAAAATGTTTCCTTGGGATGTT
TTTCAGATTGATTAAAACTAATTAAGAGGAAAAAGGGAGGAAAGCGTTCT
TACTTCCTAAGCTAATTAGCCTTCTATAAAGTCTCTGTAATTGACATAAC
ATTTCGTAGTTGGATTTCATCATTCATCTGATGATTATTCATGAAGTTGA
ACTAAGCGCGTGGCAGTGGGGCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_m05.b1 MSMg01no415_m05.b1 CHROMAT_FILE:
MSMg01no415_m05.b1 PHD_FILE: MSMg01no415_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:14 2005
         (191 letters)



>mm_chr3_141118722_141119312
          Length = 591

 Score =  354 bits (183), Expect = e-102
 Identities = 186/187 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   atttaggaaaaaaatgtagttaaaaacaccaaacacacataactgacttaggctgcatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atttaggaaaaaaatgtagttaaaaacaccaaacacacataactgacttaggctgcatgt 264

                                                                       
Query: 65  cataaaatcctcagaaattattgttttgtctattttaaaaatatttcttagttatatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataaaatcctcagaaattattgttttgtctattttaaaaatatttcttagttatatttt 324

                                                                       
Query: 125 ctgtgtcaggtacagttaagggttatgaaaagcaaatagaatggctatgtgtgctggtga 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtgccaggtacagttaagggttatgaaaagcaaatagaatggctatgtgtgctggtga 384

                  
Query: 185 gtcatta 191
           |||||||
Sbjct: 385 gtcatta 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no415_m05.g1 MSMg01no415_m05.g1 CHROMAT_FILE:
MSMg01no415_m05.g1 PHD_FILE: MSMg01no415_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:14 2005
         (239 letters)



>mm_chr3_141256674_141257312
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctccagagtaagtgccactaatacactacaaacccaagtccttgaaatgcaaagcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctccagagtaagtgccactaatacactacaaacccaagtccttgaaatgcaaagcgtgc 380

                                                                       
Query: 61  ctcctcacccactgttaaccccaagcccagggactagtttttctttcttctttccttggc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcctcacccactgttaaccccaagcccagggactagtttttctttcttctttccttggc 320

                                                                       
Query: 121 atgtattcttcagacagtcctgagtgaggcccattagtgcctgtgcagcaccaagtgttt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 atgtattcttcagacagtcctgagtgaggcccgttagtgcctgtgcagcaccaagtgttt 260

                                                                      
Query: 181 catctctatcagaaaaatgacttgcaaatggagatttttgccccagtggaaagttaatc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catctctatcagaaaaatgacttgcaaatggagatttttgccccagtggaaagttaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)