Query= MSMg01no415_n11.b1 MSMg01no415_n11.b1 CHROMAT_FILE:
MSMg01no415_n11.b1 PHD_FILE: MSMg01no415_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:20 2005
(343 letters)
>mm_chr3_153380944_153381686
Length = 743
Score = 429 bits (222), Expect = e-125
Identities = 295/334 (88%), Gaps = 24/334 (7%)
Strand = Plus / Minus
Query: 1 gctctgggaagagactcaacatttttttttaatttataagtttattttatatatatatat 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 672 gctctgggaagagactcaacatttttttaaaatttataagtttattttatatatatatat 613
Query: 61 atatatatatatatatatatatatattcacacacatacatatatacacacatatatgtat 120
| |||||||||||||||||||||||||||||||||||
Sbjct: 612 -----------------------t-ttcacacacatacatatatacacacatatatgtat 577
Query: 121 atttacttattaaatttattttacatatatatttaaataaaagtccacaagctgtatgac 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atttacttattacatttattttacatatatatttaaataaaagtccacaagctgtatgac 517
Query: 181 cctgaggttttttcactcctgtctgcctgggatggcattggaaagtcaatgtgcatctct 240
||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct: 516 cctcaggttttttcactcctgtctgcctggggtagcattggaaagccaatgtgcatctct 457
Query: 241 tttttttttgtggatgcagggagcatagccagctgacacattttaccaaatgctgatagc 300
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 456 gctggtgctgtggatgcagggagcagagccagctgacacattttaccaaatgctgatagc 397
Query: 301 tgcattgtgtttcttgggcgtgagcttttttttt 334
|||||||||||||||||||||| |||||||||||
Sbjct: 396 tgcattgtgtttcttgggcgtgggcttttttttt 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_n11.g1 MSMg01no415_n11.g1 CHROMAT_FILE:
MSMg01no415_n11.g1 PHD_FILE: MSMg01no415_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:20 2005
(492 letters)
>mm_chr3_153202973_153203858
Length = 886
Score = 737 bits (381), Expect = 0.0
Identities = 465/501 (92%), Gaps = 19/501 (3%)
Strand = Plus / Plus
Query: 1 tcagcaaggctgagacaacactaggtcaacgatttctgcttttgagattattattgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcagcaaggctgagacaacactaggtcaacgatttctgcttttgagattattattgattt 255
Query: 61 cttcctataacctctctggcaaggctggaagagcagaactcggagcacgctgaagcacac 120
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 -ttcctataacttctctggcaaggctggaagagcagaactcagagcacgctgaagcacac 314
Query: 121 gtggtttcaagtgtgaatggttttatttctctcagcctctcgaagtgcattctgaacgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 315 gtggtttcaagtgtgaatggttttatttctctcagcctctcgaagtgcattctgaacaga 374
Query: 181 gtctatcttaccaggactcttacaaaccgtgcccctccctcccacctgtaactccgcata 240
||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |
Sbjct: 375 gtctatcttaccaggactcttacaaactgtgccc-tccctcctacctgtaactccgcaga 433
Query: 241 tttaataagagtgaaaggatctggatgacttccaatcaattcaccgaatgtctcggatgc 300
|||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct: 434 gacaataagggtgaaaggatctgggtgacttccaatcaattcgccgaatgtc--ggatgc 491
Query: 301 accggtcctagtatcctgctcaa-cc----caa----gctcaagccctgcggtttattca 351
|| |||||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 492 actggtcctagtatcctgctcaatcctcctcaatcctgctcaagtcctggggtttattca 551
Query: 352 catcctgtcccaaatcagcttttataaaactaattcaagttttcacctgaacatctcagt 411
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 552 catcctgtcc------agcttttataaaactaattcaagttttcacctgagcatctcagt 605
Query: 412 gtcgctatagaaaacttacccaaggttaatttgctttcccattaaacatcagcaaaccaa 471
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 606 gtcgctatagaaaacttacccaaggttaatttgcttccccattaaacatcagcaaaccaa 665
Query: 472 cttccttaaagatttcttatt 492
|||||||||||||||||||||
Sbjct: 666 cttccttaaagatttcttatt 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 886
Length adjustment: 10
Effective length of query: 482
Effective length of database: 876
Effective search space: 422232
Effective search space used: 422232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
