Query= MSMg01no415_n20.b1 MSMg01no415_n20.b1 CHROMAT_FILE:
MSMg01no415_n20.b1 PHD_FILE: MSMg01no415_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:21 2005
(289 letters)
>mm_chr3_124887119_124887807
Length = 689
Score = 538 bits (278), Expect = e-157
Identities = 283/285 (99%)
Strand = Plus / Plus
Query: 5 gaattccatggttttctcttcctgacaatgaaatgaaatagagcagtgactgagctttag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatggttttttcttcctgacaatgaaatgaaatagagcagtgactgagctttag 264
Query: 65 tcacgtgtctatgaatacagatctattaacatagttgcccatagatacatgaaaacaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacgtgtctatgaatacagatctattaacatagttgcccatagatacatgaaaacaaat 324
Query: 125 gactcaaccaaaaagggaatatagatctgaacaaagactgctcaaaagagggaattaatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactcaaccaaaaagggaatatagatctgaacaaagactgctcaaaagagggaattaatc 384
Query: 185 ctgagaaggagtcacatagtcaaacatttaaaatattcagcacacctagccatcanatgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 ctgagaaggagtcacatagtcaaacatttaaaatattcagcacacctagccatcaaatgc 444
Query: 245 aaatccatactactttgagatttcttcctacaccagtatgatttg 289
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatccatactactttgagatttcttcctacaccagtatgatttg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_n20.g1 MSMg01no415_n20.g1 CHROMAT_FILE:
MSMg01no415_n20.g1 PHD_FILE: MSMg01no415_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:22 2005
(494 letters)
>mm_chr3_124995189_124996081
Length = 893
Score = 882 bits (456), Expect = 0.0
Identities = 483/492 (98%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 2 gtgatttatacaagttatttgtgtacatcacagctgaggagattccgatctgtctcatat 61
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 559 gtgatttatacaatttatttgtgtacatcacagctgaggagattctgatctgtctcatat 500
Query: 62 tcacaattggtatttgtttaggttttgcaatacaacaacatcaagaagctgactcctcta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcacaattggtatttgtttaggttttgcaatacaacaacatcaagaagctgactcctcta 440
Query: 122 tgttttgatttttctcttggttatttttgaaaacttcagagaatgggggcataatataaa 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 tgttttgatttttctcttggttatttttgaaaacttcagagaatgggggcataatacaaa 380
Query: 182 gcacccaaatcatattaagttggtatttaggatgatgattccatactccatacatttatc 241
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 379 gcacccaaatcatactaagttggtatttaggacaatgattccatactccatacatttatc 320
Query: 242 acaccattatttaatgaaaatatagaccatacaatcgtaatccagaggtatagaaaagat 301
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acgccattatttaatgaaaatatagaccatacaatcgtaatccagaggtatagaaaagat 260
Query: 302 cagtccatttagagatattttcataagaattctcttcaaaaattatgtttgagtaaaagt 361
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 cagtccatttagagatattttcataagaattctcttc-aaaattatgtttgagtaaaagt 201
Query: 362 attatttttttaattttagaaatatttgaaataatttagtgtgttctgaactaatatcac 421
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atta-ttttttaattttagaaatatttgaaataatttagtgtgttctgaactaatatcac 142
Query: 422 tgtgtgtgcatgtgtgcagcacaacacacgtgtgtaggtaagaacgagtttgggttgttg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgtgtgtgcatgtgtgcagcacaacacacgtgtgtaggtaagaacgagtttgggttgttg 82
Query: 482 atggtctcttcc 493
||||||||||||
Sbjct: 81 atggtctcttcc 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
