AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGCCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGCAGTTTCATGA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCTCCTCTAT
AAGTTTCAGTGTTTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGGGG
TGTGGGTTCATTTCTGGGCCTCAGNTCAATTCCATGGGCCACTTGGCTGT
CTCTATACAAGACCCTGGAGGTTTTACTCCAATGTTCTGCTTTAAAGCTT
TAGTTCCGCATGGTGTATCTCCCCAAGACTTTTTTTTCTTTAAAAAAGTT
TTTGTTTCCCACGATTTTTGTTACN

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGCCTGATTCCCATGTGCTGTCCTGG
AAATAATTGTTACAAACTTCTCTTCTGAGAATTCTCTCAAACGAGTGATA
GCAGAATCAAATAAGGTCTAGGTCAAACACTTCGTTGTGTTTAAGTGCAC
ATTATTTGAATGTTATGAAGTTTTCAAGAAGTACATCGGTGTCTAGTGCC
TCAGTGTATTTCAAGTGAGTACTTCTTAGTTTTGACCAAAAGGAAATGTT
TTCAAAAGAGGACACTATATGGTGATGATGGGACAATAAACTGCCTTCAC
AAAAGGGTACTTCCTGATATTAAGAATGTGTGTTGAAATGATACAGATAT
AAAGCCAACATGGCCTCAGTGGTTTGAATGCTCTGTTTATGTACTTTATG
GTAGAATGCATTAGCTTTTGTTGGGAGAGCAAAGCTCAAGTTCCAGGTAC
AATTAAATGCACATGCGGCTCTTGCTGCCCAATTCATCACTCTTTACTCT
CCTTCAACAGGGTCAATTTCTAATCAAAATGTTTATATAGCAGCAATTTG
TGCATGTGATATGCACACCAGTATGCACAAGTGCAGCTATGCAAGAGTAT
CTGTTTGGCAGGGGCCAAAGTAAAAAATACCTGGGGGCCACCTGTGAAGA
GGAAAAAGTTTAAATTTGTGAGG

Query= MSMg01no415_o22.g1 MSMg01no415_o22.g1 CHROMAT_FILE:
MSMg01no415_o22.g1 PHD_FILE: MSMg01no415_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:27 2005
         (490 letters)



>mm_chr3_6931839_6932728
          Length = 890

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcctgattcccatgtgctgtcctggaaataattgttacaaacttctcttctgagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgtgcctgattcccatgtgctgtcctggaaataattgttacaaacttctcttctgagaat 631

                                                                       
Query: 61  tctctcaaacgagtgatagcagaatcaaataaggtctaggtcaaacacttcgttgtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctctcaaacgagtgatagcagaatcaaataaggtctaggtcaaacacttcgttgtgttt 571

                                                                       
Query: 121 aagtgcacattatttgaatgttatgaagttttcaagaagtacatcggtgtctagtgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aagtgcacattatttgaatgttatgaagttttcaagaagtacatcggtgtctagtgcctc 511

                                                                       
Query: 181 agtgtatttcaagtgagtacttcttagttttgaccaaaaggaaatgttttcaaaagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agtgtatttcaagtgagtacttcttagttttgaccaaaaggaaatgttttcaaaagagga 451

                                                                       
Query: 241 cactatatggtgatgatgggacaataaactgccttcacaaaagggtacttcctgatatta 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cactaaatggtgatgatgggacaataaactgccttcacaaaagggtacttcctgatatta 391

                                                                       
Query: 301 agaatgtgtgttgaaatgatacagatataaagccaacatggcctcagtggtttgaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agaatgtgtgttgaaatgatacagatataaagccaacatggcctcagtggtttgaatgct 331

                                                                       
Query: 361 ctgtttatgtactttatggtagaatgcattagcttttgttgggagagcaaagctcaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctgtttatgtactttatggtagaatgcattagcttttgttgggagagcaaagctcaagtt 271

                                                                       
Query: 421 ccaggtacaattaaatgcacatgcggctcttgctgcccaattcatcactctttactctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccaggtacaattaaatgcacatgcggctcttgctgcccaattcatcactctttactctcc 211

                     
Query: 481 ttcaacaggg 490
           ||||||||||
Sbjct: 210 ttcaacaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)