BAC Information

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BAC

Clone NameMSMg01-416B12
Chromosome3 (Build37)
Map Location 147,260,092 - 147,260,698
singlet/doubletsinglet
Overlap genenone
Upstream geneDnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416B12.T7 (MSMg01no416_b12.b1)MSMg01-416B12.TJ (MSMg01no416_b12.g1)
ACCAG511994AG511995
length7301,640
length of high quality
(start - end)		611 (36 - 646)---
definitionCHROMAT_FILE: MSMg01no416_b12.b1 PHD_FILE: MSMg01no416_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005CHROMAT_FILE: MSMg01no416_b12.g1 PHD_FILE: MSMg01no416_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAT
GTTTCGCACAACATTCTTGGCATTCTATGTAAATTGTCAGTTGTTCAGTG
TCTTATGGTGAGATGTGGAATCATGACTTGAACTCAAGCTGGGGAGGGCA
GAGAGCCTGACCCCAGAGCCCAGACAGGTGTTGTGCAGAAGAACTTCACA
CTGAAGCTGTGCATGCAGAGTTTGCACATCCAGGACAATGGATTTCATAG
AAGCTAGATGAGTAATCACCAAAATGCAGGAAAATGATTGATAGTGATAA
GCTTTGTGCTTTGGAAAAAGGAGCTATTCTGAGAGTCTAGGCCATAGCTT
ATGATCACAAAGAGATAAAAAGACAAGATTGGAAGGCTAGGATTTCCAGT
ATTAGTGTTCTCAAATCTGAAGCTGAACTAAGAATTTTGACTAGTGAATG
TCACATTCAACTGATCTGTTTAAAAGGAATCAGTATGCTAACCATGAGGA
AACATCTATGTTTAACAATATGGCTGTGTCTTTATTTAATTGTGTATGTA
CATATGCATGTGAGCACTGTCCACATAAAAAACTCTATTAAGTGTTTCCT
GAAAACACTGTGTGCAATTCAGCCCAGGTTTCTTTGAAGGAGAATTTTAC
AGTAGCACGTAATGCAAAGCTCCCAAGTATGAAAGCTCCCTTGACTTGTA
AGCAGTCCACTTGCTCTCCGGCTGTCAAAA

TTTTTTTACTTTTTTCTTGTTAATATTTNAACACAGAAAAGGCCGTGGCG
GTGTTNATTTTTGTANACCTTACGAAACCTTCTCGCGCGCGCTCTTATCT
CGAGGCTCTGTGTCCTGAATTTTTTTCATCGATTATGCGTAGTGGCGCTC
ACTATAACGGCGTACTCCGCCGCGTAGACGTTAGTGACCTCACAACTGCT
ACGTTACCGACATGTTGCGAGCGCCATTCCCGACGGCGCCGTAGATGAGT
GTGTGCCTCTCCAATTACAACCACATCGAATGTGTCCGTGATTGTCTTTT
ATTTGCGCGATCGGCTGTACCACTCTCAGACTAAAAGAACAGCAGATGAC
TCAAACGCGTGCGTTTCACGAAGTAGGTCGAGCGCGCGATACAAAACATG
ATCAATAACAACGATGTAGGATTCTGTTCACGATAAGTTACATATGATAT
TGATATATTCTCATATAGATCACTAGCAAATATAGTAACAATATCATTGT
GAGAGTGACAAGAGGATGTGTGACATGGAGTAGTAGGAAGACAGATTCAC
TATATGTCATACGTAGAATACTGACCGGCTAGACTGTGAGCCACAGGAAG
CGGAGGCGGGGCGGGAGTATGGTGCAGTGATGCGGATATTTCTCTCGTAT
GCTGACAGCCCCTGATGTTGTGTATGCATAGTAGGGCATGACATAATCAC
ACGAATTGCTCAGTGACAGCTTGCTTCGTATACGCTGTTCGCTCTGTATA
CCGTGTCGTATCGTGGTCTTACAGCGCATGTTATATATATTACGCTCGAT
TTACGATAGCAGAGAAGAATAGTGAACGCAAGATATTAAGCCTCATGCGC
TCGACTCCACGATTTTAGCTCGCATACACATGAACCGAACATGACACGTC
GTAGTATACTGTACGCAACTCCAGACATAAAGATAAATATATCGTACACT
ATCACCACAAGCTGATAGTCACGCTGTGAGTGATATCACGCNTGACCAAT
TCATATTAGTAGTGCGTATACTGTATTTAATCACACTATTAATATACGCG
TGAGCGTGAAAATGTATAGTACCTGATGTTTACGATCTATCACTTCTACA
TAGATATATCTCGTAGCTATGTCTCCATAAGGTATCTATACGCACACGAT
CTTCATCTCATCGTGCTCTCATCGTACNCTATTTGGTAATATATAACTAT
TATCTCTCTCATTGTTGCTACATTCTCTATAGCTCATGCCTACTATCATC
TCCCTTCTCTGATAATAGCCACGACAGCAGATAGCGATATCACGATGAGA
NGTGCACTGATATGTGGTAGATATGTGATTTACTATGCTAGTATGATGAT
ATTCTAGTTTCGAAAGTACNACATGTATAACGTTGACTGTATCAGTACTA
TCTGCCTCCGATCTGTGACCTACACATAACTAGCTNTATTGATGTGNTCG
NCNGCTCTCGCTAGCTGTGTATATATTACGACTATCTTGTCTGACACGTC
TCNGACACACGTACGCGCGGATACGAACTATCCATANTGTAGTGTANTCC
TACACAACTGTCACGTCCGACACTCGGGTTAGATGAATTTGCAGGATGGA
CGTCAATCATGCTGTCTGTCGTCTACTCTCGACTTCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_b12.b1 MSMg01no416_b12.b1 CHROMAT_FILE:
MSMg01no416_b12.b1 PHD_FILE: MSMg01no416_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:38 2005
         (611 letters)



>mm_chr3_147259888_147260898
          Length = 1011

 Score = 1127 bits (583), Expect = 0.0
 Identities = 601/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatgtttcgcacaacattcttggcattctatgtaaattgtcagttgttcagt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattcactatgttccgtacaacattcttggcattctatgtaaattgtcagttgttcagt 752

                                                                       
Query: 65  gtcttatggtgagatgtggaatcatgacttgaactcaagctggggagggcagagagcctg 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtcttatagtgagatgtggaatcatgacttgaactcaagctggggagggcagagagcctg 692

                                                                       
Query: 125 accccagagcccagacaggtgttgtgcagaagaacttcacactgaagctgtgcatgcaga 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 691 accccagagcccagacaggtgttgtgcagaagaccttcacactgaagctgtgcatgcaga 632

                                                                       
Query: 185 gtttgcacatccaggacaatggatttcatagaagctagatgagtaatcaccaaaatgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 631 gtttgcacatccaggacaatggatttcatagaagctagatgagtaatcaccaaaacgcag 572

                                                                       
Query: 245 gaaaatgattgatagtgataagctttgtgctttggaaaaaggagctattctgagagtcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaaaatgattgatagtgataagctttgtgctttggaaaaaggagctattctgagagtcta 512

                                                                       
Query: 305 ggccatagcttatgatcacaaagagataaaaagacaagattggaaggctaggatttccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggccatagcttatgatcacaaagagataaaaagacaagattggaaggctaggatttccag 452

                                                                       
Query: 365 tattagtgttctcaaatctgaagctgaactaagaattttgactagtgaatgtcacattca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tattagtgttctcaaatctgaagctgaactaagaattttgactagtgaatgtcacattca 392

                                                                       
Query: 425 actgatctgtttaaaaggaatcagtatgctaaccatgaggaaacatctatgtttaacaat 484
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 391 actgatctgtttaaaaggaatcagtatgctaaccatcaggaaacatctatgtttaacaat 332

                                                                       
Query: 485 atggctgtgtctttatttaattgtgtatgtacatatgcatgtgagcactgtccacataaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atggctgtgtctttatttaattgtgtatgtacatatgcatgtgagcactgtccacataaa 272

                                                                       
Query: 545 aaactctattaagtgtttcctgaaaacactgtgtgcaattcagcccaggtttctttgaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaactctattaagtgtttcctgaaaacactgtgtgcaattcagcccaggtttctttgaag 212

                  
Query: 605 gagaatt 611
           |||||||
Sbjct: 211 gagaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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