BAC Information

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BAC

Clone NameMSMg01-416E16
Chromosome3 (Build37)
Map Location 82,712,448 - 82,712,843
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
Downstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416E16.T7 (MSMg01no416_e16.b1)MSMg01-416E16.TJ (MSMg01no416_e16.g1)
ACCAG512145AG512146
length724737
length of high quality
(start - end)
52 (496 - 547)396 (171 - 566)
definitionCHROMAT_FILE: MSMg01no416_e16.b1 PHD_FILE: MSMg01no416_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:53 2005CHROMAT_FILE: MSMg01no416_e16.g1 PHD_FILE: MSMg01no416_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGAG
ATTACACTAGAATGGATCTCTTCTTACAGAAAGAGGGATTTCTAAAAAAG
TGTTATCGCTTCTCTGGAAGCAAGTGGGGACTAGGACTTGTCTCGAAGTC
TTTCGTGTAGAGAATGCATGACCATATGGAGCTGAGACAGGTTACCGAAT
GAGATATGATGTTGCACTGGCAAAGGGCTGGATGCCTTGTTAAATGTGCA
TACCCTTAACTCTCATTGGTCAAGATAGTACAAGCTGGTATCGTACTTAG
CTGAGCATCTCGTAAATGGATTCCACGACAAGGTATTACACAGTCATGTG
GAGAGTAGCAAACGACGCGAGAGAATATAGAAGAAAGAATACACATCCAA
GAAAGGAACTGGAGTACAGCACAGAGAAAGTTTAGAAGCTCAGCAGGGAA
AGCTGTACAACAGAGGGGTTTGGGTTTGGGTTTGGTTTGATGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGG
TGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCTTTGGTCTACTTGT
CTGTCTCTATACCCATACCATGGCAGTTTTATCACAATTGTTCCGTAGTA
TACCTTTTGGCTCGGCTGGGAGTTCTCCCCCGAATTTCCTTTACCCTTGA
GAAAAATTTTTTGTTTCTCTACGN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGACTAAAAGTACTACCTGAAGGT
CTGCATGAATAAACATCAAACCCACACTGATGTGTGATTGAAAAATCAAG
TTTTGTTTTGCTCCATGAGAAAATACCATGACAAAGGCAGAGGACATCAG
CTATGTAACAATGGATGGGCAAGGCGCCATTCAGATTGTTTCCTGTAATG
GCCATTACTACAACAATCAGGAAATTCTGAGGAAGCCTGAAGTTTACATG
ATAATACTGCTGATAGTTCTTTGACTTTGATAATTATAAAAGTGTGATTA
TATACAGAGCAGGGTTGAGGGACAAGTGGACATCAAAGCTACAACTTGCT
AACTGGTTGGAAAAATGTGCGTGCACACATGTGTCCATATATACAGGTGA
AGGGTAAAGTGTGGGAATTCTTTGGACATTTTTTTTCAGATATTTAAGAG
ATCTATTATGAAAATTAAGGACTAAAAAAAGTGTCTTCCTTTCTCTATTG
ATTGGGGCCTTTCCATTTTAGGGTTGAACATCTTGAGTGAGTTCAGCTTT
GAAATTCACTTCATGTGCTTTGTTTCTGAGTAAAGTATTTGGAAGCACCC
CGCCCCTATAAATTTAAAAATGTTCTACCCATAAAATCTCCTGGGCCCCT
TTTATTAGTTCTCCAAAGAAAATCCCCTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_e16.g1 MSMg01no416_e16.g1 CHROMAT_FILE:
MSMg01no416_e16.g1 PHD_FILE: MSMg01no416_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:53 2005
         (396 letters)



>mm_chr3_82712248_82713043
          Length = 796

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%), Gaps = 2/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataccatgacaaaggcagaggacatcagctatgtaacaatggatgggcaaggcgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaataccatgacaaaggcagaggacatcagctatgtaacaatggatgggcaaggcgccat 537

                                                                       
Query: 61  tcagattgtttcctgtaatggccattactacaacaatcaggaaattctgaggaagcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tcagattgtttcctgtaatggccattactacaacaatcaggaaattctgaggaagcctga 477

                                                                       
Query: 121 agtttacatgataatactgctgatagttctttgactttgataattataaaagtgtgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agtttacatgataatactgctgatagttctttgactttgataattataaaagtgtgatta 417

                                                                       
Query: 181 tatacagagcagggttgagggacaagtggacatcaaagctacaacttgctaactggttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tatacagagcagggttgagggacaagtggacatcaaagctacaacttgctaactggttgg 357

                                                                       
Query: 241 aaaaatgtgcgtgcacacatgtgtccatatatacaggtgaagggtaaagtgtgggaattc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaaaatgtgtgtgcacacatgtgtccatatatacaggtgaagggtaaagtgtgggaattc 297

                                                                       
Query: 301 tttggaca-ttttttttcagatatttaagagatctattatgaaaattaaggactaaaaaa 359
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 296 tttggacatttttttttcagatatttaagagatctattatgaaaattaaggact-aaaaa 238

                                                
Query: 360 agtgtcttcctttctctattgattggggcctttccat 396
           ||||||||||||||||||||||||||| |||||||||
Sbjct: 237 agtgtcttcctttctctattgattgggtcctttccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)