BAC Information

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BAC

Clone NameMSMg01-416I17
Chromosome3 (Build37)
Map Location 52,269,479 - 52,269,938
singlet/doubletsinglet
Overlap genenone
Upstream geneNarg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416I17.T7 (MSMg01no416_i17.b1)MSMg01-416I17.TJ (MSMg01no416_i17.g1)
ACCAG512336AG512337
length6971,058
length of high quality
(start - end)		610 (36 - 645)---
definitionCHROMAT_FILE: MSMg01no416_i17.b1 PHD_FILE: MSMg01no416_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:12 2005CHROMAT_FILE: MSMg01no416_i17.g1 PHD_FILE: MSMg01no416_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAAT
GTTTCCCATCAGATAATATCAAAACAGTTACATTATCCCAATGGACATAT
GCCTTTAAATAAAAGTCTATTCGTTTGCTGCTTAATGGCATTAAGATGAG
AAATTAATTTTTTATACACCCTTACTCCTTATAAAAAGCTGATACAAGTA
GAATAGACTAAAGAACTCAGTTTTGGCTCTATTTTTGCAAAAATAAGATA
AATGGAGACCAACACCGGCACACAGTCACTACCACCTTACTCTCGGTCTT
AGTTAGGATCTTACTGCTGTGAAAAGACACCATGACCATGGCAAGTCTTA
TAACAGAAAACACTTAACTGGGGCTGAGTTACAATGCAGAGCTTCAATTC
ATTATCATCATGGTGGGAAGCATGGCAGCAAGCAGGCAGGCATGGTGCTG
GAGAGGTCCCTGAGAGTTCTACATCTGGATCTGCAGGCAATGACAGTGAC
ACACTGCCCAGCCTTGAACTTCTGAGACCTCAAGGCCCATCCTAGTGACA
CGTTTCCTCCAACAAGGCCATACCTACTCCAAAAAGGCCACACCTCTTAA
TAGGTCCACTCCCTATGGGCCCATATTGGGGCCATTTTTATTCAAATCAC
CACATTCCGACTTCCACGTCCCCCTCAATGTACCACAACCACCAGCA

TGGGCCGAGCCCGCCCCCTGGNCTTACCAAGAACATATNTANGGGTNGAA
CACCTANTAAGAANAGNTAANCCCGNCGAANAAATTNNCACANCANTANG
NCNGTNTNTAACCATGNGAATCGCCTCGNGAAGAATNTTNGCGGCCCTAT
ATCTAATTCGTACTCACGCCATAACCCGNTCGTNCNTNGNNTGGTCGTCG
TCGNNTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTC
CCCNCCNNCCCCCCCCCCCCCCCCCCCCCNCNNNCNCNCCCCCCCCCCCC
CCCCCCCCCCCCCTCCCCNNCCCCNNCCCCCCCCCCCCCNTCCCCCCCNC
CCCCNCCCCCCNCTCTCTCCCCTCCCCTCCCCCCCCTCCCTCCCCTCTCT
CCCCTTCCCTNCCCCCCCCCCCTCCCTCCCCCCCCCCCTCTCCCCCCCCC
CCCCCCCTCTTCTTTTCTCTCTCNCNCNNCCCCCCCCCCNCNCCCCCCCC
CCCCCCCCCCCCCCTCCCTCCCCCCCCCCTCTCCCCCCCNCCCTCTCCTC
CCCCTTTCTTNTTTCCTCCTCCCCCTCCCTCCCNCCCCTCCTTCTTCCCC
TCCCCCCCCCCTCTCTTTCCCCTCCCNCCCCCCCCCCCTCTCCTCTCCCC
CTCCCCCCCTCCCCCTCCCCCCCCCCCCCCCCCCCTCCCCCCCTCCCCCC
CCCCCCCCCCTCCACCCCTCTCCCCCCTCCCNTCCCCACCCCCCCNTCCA
CACACTCCTCCCCTACCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCC
CTCTCCCCTCCCTTCCCTCCTTCTCTCCTCCCTCCCCCCCCCCCACCCTC
TCCCCACACAACAACACAAACAACAAAAACCACAAACACCAAACCACCAC
CACACCCCCACCCCCCACACCACCCAACCACACACACCCAACACCCCACA
CACTCACCTCACCCCCACCCACACCACCCCCCAACCCACCACCACCACAA
CCCACCAAAACTCAACCCAACAAAACAACACAACACCACACACCCACACC
CACACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_i17.b1 MSMg01no416_i17.b1 CHROMAT_FILE:
MSMg01no416_i17.b1 PHD_FILE: MSMg01no416_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:12 2005
         (610 letters)



>mm_chr3_52269479_52270488
          Length = 1010

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 23  atcagataatatcaaaacagttacattatcccaatggacatatgcctttaaataaaagtc 82
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 460 atcagataatatcaaaacagttacattatcccaatggacacatgcctttaaataaaagtc 401

                                                                       
Query: 83  tattcgtttgctgcttaatggcattaagatgagaaattaattttttatacacccttactc 142
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tattcgtttgctgcttagtggcattaagatgagaaattaattttttatacacccttactc 341

                                                                       
Query: 143 cttataaaaagctgatacaagtagaatagactaaagaactcagttttggctctatttttg 202
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 340 cttataaaaagctgatacaagtagaatagactaaagaactcagtttcggctctatttttg 281

                                                                       
Query: 203 caaaaataagataaatggagaccaacaccggcacacagtcactaccaccttactctcggt 262
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 caaaaataagataaatggagaccaacaccggcacacagtcaccaccaccttactctcggt 221

                                                                       
Query: 263 cttagttaggatcttactgctgtgaaaagacaccatgaccatggcaagtcttataacaga 322
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 220 cttagttagggtcttactgctgtgaaaagacaccatgaccatggcaagtcttataacgga 161

                                                                       
Query: 323 aaacacttaactggggctgagttacaatgcagagcttcaattcattatcatcatggtggg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 160 aaacacttaactggggctgagttacaatgcagagcttcaattcattatcatcatggtgga 101

                                                                       
Query: 383 aagcatggcagcaagcaggcaggcatggtgctggagaggtccctgagagttctacatctg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aagcatggcagcaagcaggcaggcatggtgctggagaggtccctgagagttctacatctg 41

                                                   
Query: 443 gatctgcaggcaatgacagtgacacactgcccagccttga 482
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  gatctgcaggcaatgacagtgacacactgcccagccttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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