BAC Information

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BAC

Clone NameMSMg01-416K12
Chromosome3 (Build37)
Map Location 50,223,707 - 50,385,720
singlet/doubletdoublet
Overlap geneSlc7a11, EG621304
Upstream geneLOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
Downstream geneLOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416K12.T7 (MSMg01no416_k12.b1)MSMg01-416K12.TJ (MSMg01no416_k12.g1)
ACCAG512421AG512422
length698729
length of high quality
(start - end)		564 (46 - 609)561 (76 - 636)
definitionCHROMAT_FILE: MSMg01no416_k12.b1 PHD_FILE: MSMg01no416_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:20 2005CHROMAT_FILE: MSMg01no416_k12.g1 PHD_FILE: MSMg01no416_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,385,157 - 50,385,720)(50,223,707 - 50,224,267)
sequence
CACTCACTATTTCGAGAGGATCCGCGGAATTCATAGGTATTGCTAATTTC
TGAGGTTCATTATATTCTCTTTCAAATGAGCAATAAAAAGTGAAGAAATG
CCATAGAAAATTATCTGGAATCTTGTCACATCTAAGACACTTAAACTTCA
GTTTTCAAACAAATACAAACACTGCTATTTGGCCCCTGTTGAAAGACAAG
AGCTAGATTTCATCAGCCTTGGACTCATGTTTACTTCTTCCACTGTGTCA
ACAACCTCATGCAGGACTCAAAACACCCTGGACCAGTGGATGCTGGATAT
GTATTTATTTTGTCAAAATGTCAGCATGAATTATTTTCATCTTGTGACTG
TGGATCTTGACCTTTGAACTCTGTCCTAGTTTCTCCCTATGACAACCATT
CCTCAATTTTTCTCTACTATATTAGACAGAGTTGTAAGAAGTTTCCTTCT
AGAGAATTGGTGTCTTGTGATGTGTGGATATTGAAGCACAAAACCAATTA
TTCTTTATCTATATTGTAAAGTATAATTTTTATACTATATTGTATAGTAT
AAGAGGAAAGGAATAATATAAATATTAGTTATTAGTGTATTGTCAACATG
ATGCCTCAATAGGTAAAAGTGCTGGTCATCAAGGCTGGACACCTAAGGTT
GGTCCCCAGAGCTCACATAGTGGAAGGAGAGAACTGATTCCTTTAAGT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATTTGAAATATATAGACAGAAAA
AATGCAATAGCGATAAGTGTGATATAAAAAGTGCACACATACACGCACAT
AACTAATGATGTGTTTTAACAACTAGAAAGTTAAAAAAATTAAAAACAGC
AGTTGTTGTTACTCTAGGAGAATGCATATAACATTGTTATTCTAGGAGAT
GAAACTGTCGATGTGACCCTTACTGTGCACATGCTCCATTTTTCAGTATT
TAACGCAAGACTGGCTGGCAGAATTATAAGGGTGGATTATAAATGAGCTA
CTCCTCCCTGCTCTGAGTATATCAGGGATAGTGCTGTGGAATGTACTATT
TGTGACTGATTTGACATGTTTGTTATAAGCCTGAGGCAACAGGCAGTATG
CAAACCAAATGAAATAAATAAGCAAACATATAAGTAACACCCCAAACTGA
ATAAACCATATGAATTAAGGAATATGCCAGGTTTTGTGTGTCAGAGATAG
CCAGTTGCTTCTTAATAGTTGATGAACTGGTCTTTCTCAACAGCCCTAAT
GCAAGAAGGGAACTGTCTGTAGAAAGAATATGACTTCAAGTATTTTCTCA
TGTCCCTAAAGAATACGGAAAAGATAGTGCCTGGGTACAGTTTGGGGAAA
AGAAGAATGAAATGGATCATTTCAGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_k12.b1 MSMg01no416_k12.b1 CHROMAT_FILE:
MSMg01no416_k12.b1 PHD_FILE: MSMg01no416_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:20 2005
         (564 letters)



>mm_chr3_50384957_50385920
          Length = 964

 Score = 1083 bits (560), Expect = 0.0
 Identities = 563/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctgaggttcattatattctctttcaaatgagcaataaaaagtgaagaaatgccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atttctgaggttcattatattctctttcaaatgagcaataaaaagtgaagaaatgccata 705

                                                                       
Query: 61  gaaaattatctggaatcttgtcacatctaagacacttaaacttcagttttcaaacaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaaaattatctggaatcttgtcacatctaagacacttaaacttcagttttcaaacaaata 645

                                                                       
Query: 121 caaacactgctatttggcccctgttgaaagacaagagctagatttcatcagccttggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 caaacactgctatttggcccctgttgaaagacaagagctagatttcatcagccttggact 585

                                                                       
Query: 181 catgtttacttcttccactgtgtcaacaacctcatgcaggactcaaaacaccctggacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 catgtttacttcttccactgtgtcaacaacctcatgcaggactcaaaacaccctggacca 525

                                                                       
Query: 241 gtggatgctggatatgtatttattttgtcaaaatgtcagcatgaattattttcatcttgt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtggatgctggagatgtatttattttgtcaaaatgtcagcatgaattattttcatcttgt 465

                                                                       
Query: 301 gactgtggatcttgacctttgaactctgtcctagtttctccctatgacaaccattcctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gactgtggatcttgacctttgaactctgtcctagtttctccctatgacaaccattcctca 405

                                                                       
Query: 361 atttttctctactatattagacagagttgtaagaagtttccttctagagaattggtgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atttttctctactatattagacagagttgtaagaagtttccttctagagaattggtgtct 345

                                                                       
Query: 421 tgtgatgtgtggatattgaagcacaaaaccaattattctttatctatattgtaaagtata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgtgatgtgtggatattgaagcacaaaaccaattattctttatctatattgtaaagtata 285

                                                                       
Query: 481 atttttatactatattgtatagtataagaggaaaggaataatataaatattagttattag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atttttatactatattgtatagtataagaggaaaggaataatataaatattagttattag 225

                                   
Query: 541 tgtattgtcaacatgatgcctcaa 564
           ||||||||||||||||||||||||
Sbjct: 224 tgtattgtcaacatgatgcctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_k12.g1 MSMg01no416_k12.g1 CHROMAT_FILE:
MSMg01no416_k12.g1 PHD_FILE: MSMg01no416_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:20 2005
         (561 letters)



>mm_chr3_50223507_50224467
          Length = 961

 Score = 1085 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatttgaaatatatagacagaaaaaatgcaatagcgataagtgtgatataaaaagtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatttgaaatatatagacagaaaaaatgcaatagcgataagtgtgatataaaaagtgca 260

                                                                       
Query: 61  cacatacacgcacataactaatgatgtgttttaacaactagaaagttaaaaaaattaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatacacgcacataactaatgatgtgttttaacaactagaaagttaaaaaaattaaaa 320

                                                                       
Query: 121 acagcagttgttgttactctaggagaatgcatataacattgttattctaggagatgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcagttgttgttactctaggagaatgcatataacattgttattctaggagatgaaac 380

                                                                       
Query: 181 tgtcgatgtgacccttactgtgcacatgctccatttttcagtatttaacgcaagactggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcgatgtgacccttactgtgcacatgctccatttttcagtatttaacgcaagactggc 440

                                                                       
Query: 241 tggcagaattataagggtggattataaatgagctactcctccctgctctgagtatatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcagaattataagggtggattataaatgagctactcctccctgctctgagtatatcag 500

                                                                       
Query: 301 ggatagtgctgtggaatgtactatttgtgactgatttgacatgtttgttataagcctgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatagtgctgtggaatgtactatttgtgactgatttgacatgtttgttataagcctgag 560

                                                                       
Query: 361 gcaacaggcagtatgcaaaccaaatgaaataaataagcaaacatataagtaacaccccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaacaggcagtatgcaaaccaaatgaaataaataagcaaacatataagtaacaccccaa 620

                                                                       
Query: 421 actgaataaaccatatgaattaaggaatatgccaggttttgtgtgtcagagatagccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgaataaaccatatgaattaaggaatatgccaggttttgtgtgtcagagatagccagt 680

                                                                       
Query: 481 tgcttcttaatagttgatgaactggtctttctcaacagccctaatgcaagaagggaactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcttcttaatagttgatgaactggtctttctcaacagccctaatgcaagaagggaactg 740

                                
Query: 541 tctgtagaaagaatatgactt 561
           |||||||||||||||||||||
Sbjct: 741 tctgtagaaagaatatgactt 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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