Query= MSMg01no416_o07.b1 MSMg01no416_o07.b1 CHROMAT_FILE:
MSMg01no416_o07.b1 PHD_FILE: MSMg01no416_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:37 2005
(404 letters)
>mm_chr3_38678446_38679249
Length = 804
Score = 741 bits (383), Expect = 0.0
Identities = 398/409 (97%), Gaps = 11/409 (2%)
Strand = Plus / Minus
Query: 1 cagtatgttttcttagagaaagcaacatctttgttttttttgtttgtttgtttgtttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagtatgttttcttagagaaagcaacatctttgttttttttgtttgtttgtttgtttgtt 452
Query: 61 tgtttttcaggctccttcctgcttcacaatctgatagtccactttctttgtggtcatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgtttttcaggctccttcctgcttcacaatctgatagtccactttctttgtggtcatttc 392
Query: 121 tatgcctcttcatgcagtttgatagtgtttctgccgatgtgtgatttctgcaggtccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatgcctcttcatgcagtttgatagtgtttctgccgatgtgtgatttctgcaggtccctt 332
Query: 181 ggtccctgcacataccaaagtgtatgtgcttaaaactctcattcagaaagatccatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggtccctgcacataccaaagtgtatgtgcttaaaactctcattcagaaagatccatgtct 272
Query: 241 gcagt-----cttttttatgcactctggccatctgtgaggggattatcctgattactact 295
||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcagtccaacc------atgcactctggccatctgtgaggggattatcctgattactact 218
Query: 296 caagatggaaatgtatgcccatggtgggtgtcaccattccctagacaggaagtcctgagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 caagatggaaatgtatgcccatggtgggtgtcaccattccctagacaggaagtcctgagc 158
Query: 356 actggcattagttatttgatctctactctggattttgatgcaatgtgac 404
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 actggcattagttatttgatctctactctggattttgatgcaatgtgac 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_o07.g1 MSMg01no416_o07.g1 CHROMAT_FILE:
MSMg01no416_o07.g1 PHD_FILE: MSMg01no416_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:37 2005
(516 letters)
>mm_chr3_38545460_38546375
Length = 916
Score = 998 bits (516), Expect = 0.0
Identities = 516/516 (100%)
Strand = Plus / Plus
Query: 1 actgtgtaggtcaagctggtctctaactcacagaaatctgcttgcctctactacttccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgtaggtcaagctggtctctaactcacagaaatctgcttgcctctactacttccag 260
Query: 61 aatcctggcattaaaggcatctgccaccacatacagcccgtagggctttattttaacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcctggcattaaaggcatctgccaccacatacagcccgtagggctttattttaacagt 320
Query: 121 acagttcaattacctgtgttaagacaaaagctagtgtttaaagaaatgatgttgattgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagttcaattacctgtgttaagacaaaagctagtgtttaaagaaatgatgttgattgtg 380
Query: 181 acatgatctttggaaggaaatgtccaagagcacactcttgctcttgttgccttttggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgatctttggaaggaaatgtccaagagcacactcttgctcttgttgccttttggagc 440
Query: 241 tgtcttctgagatgttcaactgtgccaggctgggactgggacactgaatattataagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcttctgagatgttcaactgtgccaggctgggactgggacactgaatattataagagt 500
Query: 301 acaggatgttgtcatagtactaataactccaggggaatacccagagcttctcatccatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggatgttgtcatagtactaataactccaggggaatacccagagcttctcatccatgt 560
Query: 361 gcattcactggatgttaagatttgtgggatgggaggaccacttaacacattaactttgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcattcactggatgttaagatttgtgggatgggaggaccacttaacacattaactttgga 620
Query: 421 catggtattagcatgaatgcctaacaaatggtccctaccttctgggtatgaagtcacttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggtattagcatgaatgcctaacaaatggtccctaccttctgggtatgaagtcacttt 680
Query: 481 actcttgtttcagcatcccagggtcatctctgagta 516
||||||||||||||||||||||||||||||||||||
Sbjct: 681 actcttgtttcagcatcccagggtcatctctgagta 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
