Query= MSMg01no417_f01.b1 MSMg01no417_f01.b1 CHROMAT_FILE:
MSMg01no417_f01.b1 PHD_FILE: MSMg01no417_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:10 2005
(613 letters)
>mm_chr3_58780873_58781885
Length = 1013
Score = 1009 bits (522), Expect = 0.0
Identities = 549/560 (98%), Gaps = 4/560 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaagtgcatacagtctgctctctagcttgttcatcctgttcaaccaccatgtag 63
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 556 ggaattcaagtgcagacagtctgctctctagcttgttcatcctgctcaaccaccatgtag 497
Query: 64 aattggcattactgttattatttcttcacttggtcttctctttaagctttctttgatgcg 123
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 496 aattggcattactgttattatttcttcactaggtcttctctctaagctttctttgatgcg 437
Query: 124 tacacagtacttaaaatcaaagagagcgaaagctgggaaacacccatgcttgagagatag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tacacagtacttaaaatcaaagagagcgaaagctgggaaacacccatgcttgagagatag 377
Query: 184 gaagaatcagagaaaggacacagactgtagaaagatacattaaagcagtgatatatgaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaagaatcagagaaaggacacagactgtagaaagatacattaaagcagtgatatatgaag 317
Query: 244 gaggaccatgctaagtaaaagacaacatcctgggggaaatgctcccattctggagatagg 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 gaggaccatgctaagtaaaagacaacatcctgggggaaatgctcccagtctggagatagg 257
Query: 304 caagaatttaacagacacacaaaacacagatcacaaagcaaaacacactgcattggacct 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 caagaatttaacagacacacaaaacacagatcacaaagcaaaacaaactgcattggacct 197
Query: 364 cattagcactgagattttatgctttgttaataaagtgctaactaagtaactgaaaaaagc 423
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 196 cattagcactgagattttatgctttgttaataaagtgctaa----gtaactgaaaaaagc 141
Query: 424 aactcacacattgagaaaatgtttatactaaatatgtctgatgaaggactgatgcccaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aactcacacattgagaaaatgtttatactaaatatgtctgatgaaggactgatgcccaat 81
Query: 484 gtacgtaaagaatttgtacaactctatactaagggaatattagaaattaataaagtacac 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gtacataaagaatttgtacaactctatactaagggaatattagaaattaataaagtacac 21
Query: 544 atgcttacatgggtgcatac 563
||||||||||||||||||||
Sbjct: 20 atgcttacatgggtgcatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_f01.g1 MSMg01no417_f01.g1 CHROMAT_FILE:
MSMg01no417_f01.g1 PHD_FILE: MSMg01no417_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:10 2005
(511 letters)
>mm_chr3_58613494_58614404
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Plus
Query: 1 aaacagctggagctatagatggggaattgaagataaaaatgcaaaggaagatgaaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacagctggagctatagatggggaattgaagataaaaatgcaaaggaagatgaaaggca 260
Query: 61 cctcgaagggagatcatttcacggctattacctaaagggaggttttgtttcatttcaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcgaagggagatcatttcacggctattacctaaagggaggttttgtttcatttcaaaa 320
Query: 121 tcacatcgctaaaaactgacatccagcacaaggccacataaagcacacatggtaaaaccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacatcgctaaaaactgacatccagcacaaggccacataaagcacacatggtaaaaccg 380
Query: 181 ggtggtgacagcatccctattgcatcccccaaattttaagtcaccgtgacatctcaaata 240
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ggcggtgacagcatccctattgcatcccccaaattttaagtcactgtgacatctcaaata 440
Query: 241 acaaaaccatatggagatttccccctgatggagtttagcagtctctatgatagagacata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaaccatatggagatttccccctgatggagtttagcagtctctatgatagagacata 500
Query: 301 cagttaatgatgatttgagatgtagatttcttttttcttttttttggtggagcctaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttaatgatgatttgagatgtagatttcttttttcttttttttggtggagcctaccaa 560
Query: 361 acccaaggcttagcagcacactgttaccaccaggatacactgaagcccaccagcctaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccaaggcttagcagcacactgttaccaccaggatacactgaagcccaccagcctaaat 620
Query: 421 gcagtatactctcgcttaaagggaactttaggagaaattcgccattttcactgctccaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagtatactctcgcttaaagggaactttaggagaaattcgccattttcactgctccaat 680
Query: 481 ccctcacagccccttggtgctggcgtcctct 511
|||||||||||||||||||||||||||||||
Sbjct: 681 ccctcacagccccttggtgctggcgtcctct 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
