BAC Information

Click to search

BAC

Clone NameMSMg01-417G11
Chromosome3 (Build37)
Map Location 14,125,743 - 14,126,059
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417G11.T7 (MSMg01no417_g11.b1)MSMg01-417G11.TJ (MSMg01no417_g11.g1)
ACCAG512992AG512993
length746746
length of high quality
(start - end)
583 (50 - 632)517 (79 - 595)
definitionCHROMAT_FILE: MSMg01no417_g11.b1 PHD_FILE: MSMg01no417_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:16 2005CHROMAT_FILE: MSMg01no417_g11.g1 PHD_FILE: MSMg01no417_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAATTACCACAAAATAGCCAAAGCCAGACATTTTGTTGGT
AGCTCTGGAGCTGGGCACCCAGAATAGAAACACTGGATTACAGAAGTCCT
TAAAGAAAAACAGGAAAACAAAACCAAACAGGTGATGGAAATGGTCAAAA
CAATACTAGACCTAAAAAGGAAAGTAGACACAATAAAGAAAACCCAAAGT
GAGGCAACACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCAAAGA
TGCAAGCATCATCAACAGAACACAAGAGATGGAAGAGAGAATCTCAGGTG
CAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAACACAAAA
TGCAAAAAGATCCTAACTCAAACATCCAGGAAATCCAGGACACAATGAGT
AGACCAAATCTGAGGATAATAGGAGTAGATGAGAATGAAGATTTTCAACT
TAAAGGGACAGCAAATATCTTCAACAAAGTTATAGAAGAAAACTCCCCAA
ATGTAAAGAATGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCA
AATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAAC
AACTTATGCACTAATGGACACATGCTCCACTATGTTCATAGCAGCCTTAA
TTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCCCAACAGA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATATGCAAACAACTCTACACCC
TTAAAATTTTGGATAGATTTTCAAAGACACATGGTGGGGGGGGGGACAGA
AAAACTTTGATTAGAGAAACATGTTTGCACAATAATACATTACAACAATA
GCATGAATCAGAATAAGTCCTTCCACCACTTACAGGTCCTATTGATGCTC
TGAGCATGGTACTAAGAAGCTTGTGCCTATTTCCTCTAAGGAAGAGGATG
AAAATTATAAAGGTAGAGAAAATTCACCTAGCAGTTCCAGATCAGTTCAC
CAAGGCAGAAAGATAAGACAGATAACAAGCTTTCTTTTTTTTTTTTTTTT
TAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTC
CAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGTCACCATGTGG
TTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTA
CCCACTGAGCCATCTCACCAGCCCCCAGCTTTCTTTTTTTAACACGAAGC
TGTTCTGTTAATGACAGGCGGGCTTAGAGAAGACCGGAGCAAAGAGGTGG
ATACACCCTCAGAAATTTCTAGAGAGGAATACCATTTGAAATAGGTGAGC
TCATACATTAATCCCTTTCCTGTACTGAGATTATGTTCTTAAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_g11.g1 MSMg01no417_g11.g1 CHROMAT_FILE:
MSMg01no417_g11.g1 PHD_FILE: MSMg01no417_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:16 2005
         (517 letters)



>mm_chr3_14125543_14126462
          Length = 920

 Score =  542 bits (280), Expect = e-158
 Identities = 308/318 (96%), Gaps = 5/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgcaaacaactctacacccttaaaattttggatagattttcaaagacaca--tggtg 58
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |
Sbjct: 201 atatgcaaacaactctacacccttaaaattttggatagattttcaaagacacatttgggg 260

                                                                       
Query: 59  gggg-gggggacagaaaaactttgattagagaaacatgtttgcacaataatacattacaa 117
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggagggggacagaaaaactttgattagagaaacatgtttgcacaataatacattacaa 320

                                                                       
Query: 118 caatagcatgaatcagaataagtccttccaccacttacaggtcctattgatgctctgagc 177
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caatagcatgaatcagaataagtccttccaccacttacaggtcccattgatgctctgagc 380

                                                                       
Query: 178 atggtactaagaagcttgtgcctatttcctctaaggaagaggatgaaaattataaaggta 237
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct: 381 atggtactaagaagcttgtgcctagttcctctaaggaagaggatgaaaattacaaagg-a 439

                                                                       
Query: 238 g-agaaaattcacctagcagttccagatcagttcaccaaggcagaaagataagacagata 296
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagaaaattcacttagcagttccagatcagttcaccaaggcagaaagataagacagata 499

                             
Query: 297 acaagctttctttttttt 314
           ||||||||||||||||||
Sbjct: 500 acaagctttctttttttt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space:   461370
Effective search space used:   461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)