Query= MSMg01no417_h09.b1 MSMg01no417_h09.b1 CHROMAT_FILE:
MSMg01no417_h09.b1 PHD_FILE: MSMg01no417_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:21 2005
(512 letters)
>mm_chr3_75683990_75684901
Length = 912
Score = 920 bits (476), Expect = 0.0
Identities = 500/508 (98%)
Strand = Plus / Plus
Query: 5 gaattctctcatattaactctatacttccaattcttaaaatacttaacaatgtcaacctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcatattaactctatacttccaattcttaaaatacttaacaatgtcaacctt 264
Query: 65 atgccaggcctgggtaagctgtagttagagtccaagaataaattataaattctgtgattc 124
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcccaggtctgggtaagctgtagttagagtccaagaataaattataaattctgtgattc 324
Query: 125 tgaaaaactaaagtgacttctctgaaactcaaacttcgtatgcataaaataaaaatgttg 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 tgaaaaactaaagtgacttctctgaaactcaaacttcttatgcataaaataaaaatgttg 384
Query: 185 aataaaaagtccacggcccctggtgtttttgtgtgggttgggggaggcgtggtctgagca 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataaaaggtccacggcccctggtgtttttgtgtgggttgggggaggcgtggtctgagca 444
Query: 245 ctgtggatctttttaagcatctagtgagaaaatgtctagcaaatgggcagacccactcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 ctgtggatctttttaagcatctagtgagaaaatgtctagcaaatgggcagaaccactcac 504
Query: 305 acaagtcatcttcagctgttttccctaggactatttgtttaaacaggggttccccgaata 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaagtcatcttcagctgctttccctaggactatttgtttaaacaggggttccccgaata 564
Query: 365 tcactatacacttggtggaaggtagagctttggaagggctctgatttctagggcccctga 424
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 565 tcactatacacttggtggaaggtagagctatggaagggctccgatttctagggcccctga 624
Query: 425 aagataagatccaatttcctccagggcagctttggtctaggtatttgtatgttttaggaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagataagatccaatttcctccagggcagctttggtctaggtatttgtatgttttaggaa 684
Query: 485 cttctcaaggtgactcttggtcacagtt 512
||||||||||||||||||||||||||||
Sbjct: 685 cttctcaaggtgactcttggtcacagtt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_h09.g1 MSMg01no417_h09.g1 CHROMAT_FILE:
MSMg01no417_h09.g1 PHD_FILE: MSMg01no417_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:21 2005
(516 letters)
>mm_chr3_75841859_75842774
Length = 916
Score = 944 bits (488), Expect = 0.0
Identities = 513/530 (96%), Gaps = 14/530 (2%)
Strand = Plus / Minus
Query: 1 atgatgttaataaaagatatagtaattcttagtgcacaatta--------------aaaa 46
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 882 atgatgttaataaaagatatagtaattcttagtgcacaattaaaatatagataaccaaaa 823
Query: 47 caaaatgtgaatatccaatactaaatatattctttattcatgtgatatattgaaaataat 106
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 822 caaaatgtgaatatccaatactaaatatattctttattcatgtgatatatttaaaataat 763
Query: 107 ttgacatattaatgtcttaaaggaattataataaaaattaatttttgtttattgccttgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttgacatattaatgtcttaaaggaattataataaaaattaatttttgtttattgccttgc 703
Query: 167 atctggctcaagaaaaaccatggtacatagactcatttgatttaacaaaccttgataaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atctggctcaagaaaaaccatggtacatagactcatttgatttaacaaaccttgataaat 643
Query: 227 caaaacaaaaagagcatattactagtaaaattcctgtatttactaaattcaagtacaggt 286
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 caaaacaaaaagagcgtattactagtaaaattcctgtatttactaaattcaagtacaggt 583
Query: 287 ccattatagacatctgctgtaaaacaaaacaacagaatctcaaaatacacatgaaaattc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ccattatagacatctgctgtaaaacaaaacaacagaatctcaaaatacacatgaaaattc 523
Query: 347 aggagttctagaaggccaaatcatgttcaaaatgtacaaaatgactgaattctggtatgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggagttctagaaggccaaatcatgttcaaaatgtacaaaatgactgaattctggtatgc 463
Query: 407 agatattgaaagttactataaagctaaaatcggatagttgggttctgaacagaaattaga 466
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 462 agatattgaaagttactataaagctaaaatcagatagttgggttctgaacagaaattaga 403
Query: 467 atacagatcaatagaacaggactaagagtcaaggactaaattcttacaat 516
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atacagatcaatagaacaggactaagagtcaaggactaaattcttacaat 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
