Query= MSMg01no417_h20.b1 MSMg01no417_h20.b1 CHROMAT_FILE:
MSMg01no417_h20.b1 PHD_FILE: MSMg01no417_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:23 2005
(544 letters)
>mm_chr3_144122211_144123153
Length = 943
Score = 1006 bits (520), Expect = 0.0
Identities = 535/540 (99%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 5 gaattctctcttttatctttgccagtgtccagtgctttcagcctcctcaaaatcatctga 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 743 gaattctctcttttatctttgccagtgtccggtgctttcagcctcctcaaaatcatctga 684
Query: 65 tgctgttgggttttattgcccttcacctggcatgcaaggcagagtctgtgaagtgcactg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 683 tgctgttgggttttattgcccttcacctggcatgcaaggcagagtctgtgaagtgtactg 624
Query: 125 gttcctgtgggccacatccccgtggcagaacaccagaagaaaacaaagcatgcagggcag 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 623 gttcctgtgggccacatccccgtggcagaacaccagaagaaaacaaaacatgcagggcag 564
Query: 185 gagtgagaggccgaaaatgacagatgcaggaactgactggacgggttagcggatggaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagtgagaggccgaaaatgacagatgcaggaactgactggacgggttagcggatggaagt 504
Query: 245 gggctggagacagggagacagttaagaaagaatatgagcatttaccgtggttgagaggga 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 gggctggagacagggagacagttaagaaagaagatgagcatttaccgtggttgagaggga 444
Query: 305 aagtggctcaatcgatattttaaaagggaagccttcagaaccgccattctgaaaaggctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagtggctcaatcgatattttaaaagggaagccttcagaaccgccattctgaaaaggctt 384
Query: 365 acttacagcatctccatggaaaccggctttgaggaagggtgtatgagaggtctggccata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acttacagcatctccatggaaaccggctttgaggaagggtgtatgagaggtctggccata 324
Query: 425 aacggcactcctgcgtatcccaggtgctttccagaggagaaagtgaagccctgcgctgag 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aac-gcactcctgcgtatcccaggtgctttccagaggagaaagtgaagccctgcgctgag 265
Query: 485 acttcgtttactcacacttcctctgcgctggagagaagctaagccacagccccttttctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acttcgtttactcacacttcctctgcgctggagagaagctaagccacagccccttttctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_h20.g1 MSMg01no417_h20.g1 CHROMAT_FILE:
MSMg01no417_h20.g1 PHD_FILE: MSMg01no417_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:23 2005
(500 letters)
>mm_chr3_143928630_143929529
Length = 900
Score = 855 bits (442), Expect = 0.0
Identities = 485/504 (96%), Gaps = 11/504 (2%)
Strand = Plus / Plus
Query: 1 ttacacaattggggtggctgcaacacaaatagaaaagtcttcctaatacaaaccatcaaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ttacacaattggggtggctgcaacacaagtagaaaagtcttcctaatacaaaccatcaaa 260
Query: 61 gtacacatatgtaaaacagaattgagatcctctagggcactctagctataaggtcaccaa 120
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 261 gtacacatatgtaaaacagaattgtgatcctctagggcattctagctataaggtcaccaa 320
Query: 121 ggtgctgcaatgctatgacttatttcttctcacctctgctttactctgcattggttttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgctgcaatgctatgacttatttcttctcacctctgctttactctgcattggttttag 380
Query: 181 tttgaggcacagagtctcatcctgtgtgggacaggaagctaccagcagcttcaagtgtac 240
|| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tt-gaggcagagagtctcatcctgtgtaggacaggaagctaccagcagcttcaagtgtac 439
Query: 241 aaggacctttttt-accaaggaaacctagaaaaacagatacccttgtggttcccagaaag 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 aaggacctttttttaccaaggaaacctagaaaaacagatacccttgtggttcccagagag 499
Query: 300 cattcaattcctcaaaaggactcttaagatcttcttgggtcacttgttgactacagggcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cattcaattcctcaaaaggactcttaagatcttcttgggtcacttgttgactacagggcc 559
Query: 360 tcgttatttaattgacagccctactagagtctcaaggaatgtgagaagggcagatcacaa 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcgttatttgattgacagccctactagagtctcaaggaatgtgagaagggcagatcacaa 619
Query: 420 aggaaaagacctttaaccagaatt---aaaaaaaaaaaaagaaagaaaaacagaggcacc 476
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct: 620 aggaaaagaccttttaccagaatttttaaaaaaa------gaaagaaaaacagaggcacc 673
Query: 477 ctatctttgaacctaaatcagtag 500
||||||||||||||||||||||||
Sbjct: 674 ctatctttgaacctaaatcagtag 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
