BAC Information

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BAC

Clone NameMSMg01-417L13
Chromosome3 (Build37)
Map Location 43,065,609 - 43,066,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L13.T7 (MSMg01no417_l13.b1)MSMg01-417L13.TJ (MSMg01no417_l13.g1)
ACCAG513235AG513236
length747755
length of high quality
(start - end)
657 (47 - 703)568 (78 - 645)
definitionCHROMAT_FILE: MSMg01no417_l13.b1 PHD_FILE: MSMg01no417_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:41 2005CHROMAT_FILE: MSMg01no417_l13.g1 PHD_FILE: MSMg01no417_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGATAGCTCAGGTTATAAATTAAGGATACCATGAAAAACAGG
AAGTTAGTGAAAATGTAATTGAATGAGAATGGCATGTTTCAGTCCAAGCA
AGCAACAGAACTTGGCAGCTTTAGCTAAGTGGCTCTGGCCAGAGAGTAAA
GGATAGAAGAAAAAGGAATATGGAACATTCTTCAGCCCCTGAAGCCAGGC
CTATGTCAGCGATGTGCCTTCTTGGAGCCCCAATGAGACCATTGTGTGAA
GCTCTGAAAGTAAAGACTAGATTGCCTTAGAGACTCCAAGATGTGGAAAT
TTCAAGTCCTGAGATACACATACAAGGAAGCATCTAGTTGGAAGAGGAAA
ATGTTCAAGGGAAAGAAGTGTGCTGCAGTCAACAAAGGTGAGAGAGTTGG
AAATATGAAAAGCACTCTGACAGAAGGAAGCAGAACAAATTTCATGAAAA
CACTGAACAGTGGCTTAGGACATGCAAATCAATACTAACAAAATTGTGAT
AGTTCCAAGCTGAGAATGTATTAATTAAAGGGAAAATTCAAATGTTAACC
ATCAACAGCTGAGTTGACTTAGAGAAAGAACATAATGAAGAAATTAAGAG
AAATTATTGGGAATATATAGCTAGAGGAGAAAGAATGTAGTAAAAGAGGG
GTTGGGATTTCTGCAACAAAATGAAAAAGAATAAGTTTTTGATGTGG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTTTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAATGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTAT
GCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l13.b1 MSMg01no417_l13.b1 CHROMAT_FILE:
MSMg01no417_l13.b1 PHD_FILE: MSMg01no417_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:41 2005
         (657 letters)



>mm_chr3_43064983_43066039
          Length = 1057

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Minus

                                                                        
Query: 227  tggagccccaatgagaccattgtgtgaagctctgaaagtaaagactagattgccttagag 286
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1057 tggagccccaatgagaccattgtgtgaagctctgaaggtaaagactagattgccttagag 998

                                                                        
Query: 287  actccaagatgtggaaatttcaagtcctgagatacacatacaaggaagcatctagttgga 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  actccaagatgtggaaatttcaagtcctgagatacacatacaaggaagcatctagttgga 938

                                                                        
Query: 347  agaggaaaatgttcaagggaaagaagtgtgctgcagtcaacaaaggtgagagagttggaa 406
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 937  agaggaaaatgttcaagggaaagaagtgtgctgcaatcaacaaaggtgagagagttggaa 878

                                                                        
Query: 407  atatgaaaagcactctgacagaaggaagcagaacaaatttcatgaaaacactgaacagtg 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  atatgaaaagcactctgacagaaggaagcagaacaaatttcatgaaaacactgaacagtg 818

                                                                        
Query: 467  gcttaggacatgcaaatcaatactaacaaaattgtgatagttccaagctgagaatgtatt 526
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 817  gcttaggacatgcaaatcaatagtaacaaaattgtgatagttccaagctgagaatgtatt 758

                                                                        
Query: 527  aattaaagggaaaattcaaatgttaaccatcaacagctgagttgacttagagaaagaaca 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  aattaaagggaaaattcaaatgttaaccatcaacagctgagttgacttagagaaagaaca 698

                                                                        
Query: 587  taatgaagaaattaagagaaattattgggaatatatagctagaggagaaagaatgtagta 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  taatgaagaaattaagagaaattattgggaatatatagctagaggagaaagaatgtagta 638

                       
Query: 647  aaagaggggtt 657
            || ||||||||
Sbjct: 637  aaggaggggtt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)