BAC Information

Click to search

BAC

Clone NameMSMg01-418D23
Chromosome3 (Build37)
Map Location 32,973,449 - 32,973,864
singlet/doubletsinglet
Overlap genePex2
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418D23.T7 (MSMg01no418_d23.b1)MSMg01-418D23.TJ (MSMg01no418_d23.g1)
ACCAG513630AG513631
length768771
length of high quality
(start - end)		419 (73 - 491)---
definitionCHROMAT_FILE: MSMg01no418_d23.b1 PHD_FILE: MSMg01no418_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:23 2005CHROMAT_FILE: MSMg01no418_d23.g1 PHD_FILE: MSMg01no418_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGACTGGATCCCACCTAACGCTCTGTGGAAGTGGCTGGCATAT
CTGTGCTACAGTCACGGTGTGCACATGGTGTGGCAGACCATCTGGCTCAT
GACAGGCACTGACCTGGAACATCTGTCTACAGAAGGTGTGAAGAACACAC
AGGAACACACTAGAGGAAAGAAATTGACGCAATCATGACACAACACCCAT
TAACGACTAACCCTCTCGGAAGCCCAGCTTTGTGGAATGCCTCAGGCACG
ACATCAGGGGCCCCAGATTCTATGCCTGGCTCCGACCAGAGGACACATGG
CTTTTCAAGCAAGGAAGTGCCCCCTGTGAGTCTCAGAACAGACGCTAATG
CAGATGGTGTGATTGTACTGCACAGATGACAACCTGAAGATGCAGAGAAC
CTAACAGCTTACACCAAACTCCTCTGTCAGGAGAGCAGAGCTAAAGCAGA
AGGCAGGGCGAGGGAGTCGGGCTCGGTACTCTAGCTTTAGAGACGCTTTG
GGAAAGAGTGACCCGCTATGGTTTCCATGGCCTAACACCTCTCATTGCAC
TAAATTCCAAATTGTAGGTTTTGACTTTTTTCCTCCAGCTTGCCCTTAAA
AAAAGTGGTTCTCACTATTTTCCTTAAATAAGCGTGTACTTCGGTGCCTT
TTACAACAATTTTCGTTGGGTGCTCTTTCAAACACTTTTTGCCCACTTCG
ATTCCCCTCCCTCCTAAG

TTCTTCCCCCCCTCTTTCTTCTCCCCCTCTTCTGGTCTCCTCCAGCCGTC
CGAAAGACGACGCGCCATCTCGGGCGCGGCTCGTCTTTCTCCCAATCGCG
CGTCGCCCGCGGGAGATCCCCGCAACCCCCCGTCCAGGTCTTTACATATT
CGTTACGGTCACCGCTGCTCTCTTATCTCTACTTCCCCCCTCCGTCCCCG
GCCCCCCTTTCTCCCCGCTTTAGCTTCTACTTTCCCTCTCTCCNNNNGGT
GTATAGTACCGGTAAATGCTCCGCGGCGAAAAGGANACCAANATAAATGG
GGGTTTAAGGGCCCCGTGGGGCGGGGGCCCGGGCCCCCGGGGGGCTTGGT
TTCGGCAAAAAAAATATGTAAGGGGTTGGAACCACCTAAANTAAGAAAGG
GGATTTCTCGGCGGCGGGAAAAATTACTTTTTTAAAAAAACTTTTTTTTT
CCCCCAACCGTGGGGGTTCCAATGGGTAAGGGGCCTTTTATTAAAATTTT
TAGGAAGGGGAACCATTAAAGGAAGGGGGTGGGGAAAAAAAATTTTCCCA
CCGGGGGAAACAATTCTTTAAGGGGGGTAAAATAATTGGAAACCGGGAAA
GGTCAAATTAAAAAAAAATTCCCCCCCCCGGGGTTTAAAAAAGAAAAAAA
TTTTTAACAATTCAANNNNAAAAAAAAAACCCCCTTTCCCCCCTTTTGGG
GGGGGGCCAAAAAANCCCCACAGGGGGGGGGAAAATACATTTTTGTTCCC
CCGAAAAAAAAAAAAAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_d23.b1 MSMg01no418_d23.b1 CHROMAT_FILE:
MSMg01no418_d23.b1 PHD_FILE: MSMg01no418_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:23 2005
         (419 letters)



>mm_chr3_32973249_32974064
          Length = 816

 Score =  723 bits (374), Expect = 0.0
 Identities = 407/420 (96%), Gaps = 5/420 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacgctctgtggaagtggctggcatatctgtgctacagtcacggtgtgcacatggtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 taacgctctgtggaagtggctggcatatctgtgctacagtcacagtgtgcacatggtgtg 260

                                                                       
Query: 61  gcagaccatctggctcatgacaggcactgacctggaacatctgtctacagaaggtgtgaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaccatctggctcatgagaggcactgacctggaacatctgtctacagaaggtgtgaa 320

                                                                       
Query: 121 gaacacacaggaacacactagaggaaagaaattgacgcaatcatgacacaacacccatta 180
           |||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 321 gaacactcagaaacacactagaggaaagaaagtgacacaatcatgacacaacacccatta 380

                                                                       
Query: 181 acgactaaccctctcggaagcccagctttgtggaatgcctcaggcacgacatcaggggcc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accactaaccctctcggaagcccagctttgtggaatgcctcaggcacgacatcaggggcc 440

                                                                       
Query: 241 ccagattctatgcctggctccgaccagaggacacatggcttttcaagcaaggaagtg-cc 299
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||
Sbjct: 441 ccagattctatgcctggctccgaccagaggacacatggcttttcaag----gaagtgtcc 496

                                                                       
Query: 300 ccctgtgagtctcagaacagacgctaatgcagatggtgtgattgtactgcacagatgaca 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 497 ccctgtgagtctcagaacagacgccaatgcagatggtgtgattgtactgcacagatgaca 556

                                                                       
Query: 360 acctgaagatgcagagaacctaacagcttacaccaaactcctctgtcaggagagcagagc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acctgaagatgcagagaacctaacagcttacaccaaactcctctgtcaggagagcagagc 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 816
Length adjustment: 9
Effective length of query: 410
Effective length of database: 807
Effective search space:   330870
Effective search space used:   330870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |