Query= MSMg01no418_e22.b1 MSMg01no418_e22.b1 CHROMAT_FILE:
MSMg01no418_e22.b1 PHD_FILE: MSMg01no418_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:28 2005
(541 letters)
>mm_chr3_53394479_53395414
Length = 936
Score = 946 bits (489), Expect = 0.0
Identities = 526/541 (97%), Gaps = 5/541 (0%)
Strand = Plus / Plus
Query: 1 tcctctcttttgagttgacacaaagaaagctacagtagagaaatacgagagagggagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctctcttttgagttgacacaaagaaagctacagtagagaaatacgagagagggagaaa 260
Query: 61 tgtcaagactcctgttgaccgaatgaaaatctacacagggagaagcaatcggggaagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaagactcctgttgaccgaatgaaaatctacacagggagaagcaatcggggaagagg 320
Query: 121 cacggggtctgtttcctctgaaatatttagaagtaaaaactacagacaatttatgctgtc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagggtctgtttcctctgaaatatttagaagtaaaaactacagacaatttatgctgtc 380
Query: 181 agaggctcactgagaatcaaaggcaacagatcatgcggctgaagctgtgaagggattgct 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggctcgctgagaatcaaaggcaacagatcatgcggctgaagctgtgaagggattgct 440
Query: 241 tcctcatcgtttgacatttaactcacctcagcctcttcaaaagttcctacaagacgcact 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcatcgtttgacatttaactcacctcagcctcttcaaaagttcctacaagacgcac- 499
Query: 301 gcacgcaggaagcaaaagtacgctttgttacctgaccctgtgagccttccatgggagttt 360
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 ----gcaggaagcaaaaggacgctctgttacctgaccctgtgagccttccatgggagttt 555
Query: 361 tgctcccaaagaagtcaaaatagatttgtaaggcagcaccgactataatagttcccatca 420
|||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 556 tgctcccaaagaagtcaaaatagatttgaaaggaagcatcgactataatagttcccatca 615
Query: 421 ttgccccagacgcaaaacactcaaggagtactctattgtactacgtcaaagcactaccaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 616 ttgccccagacgcaaaacactcaaggagtactctattgtactacgtcaaagcactatcaa 675
Query: 481 acctttcagccactacacagtagctgcagggctgaggctggaactactcgcagcacttgc 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 676 acctttcagccactacacagtagctacagggctgaggctggaactactcgcagcacttgc 735
Query: 541 c 541
|
Sbjct: 736 c 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 936
Length adjustment: 10
Effective length of query: 531
Effective length of database: 926
Effective search space: 491706
Effective search space used: 491706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_e22.g1 MSMg01no418_e22.g1 CHROMAT_FILE:
MSMg01no418_e22.g1 PHD_FILE: MSMg01no418_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:28 2005
(472 letters)
>mm_chr3_53437391_53438265
Length = 875
Score = 837 bits (433), Expect = 0.0
Identities = 464/475 (97%), Gaps = 3/475 (0%)
Strand = Plus / Minus
Query: 1 agttgggaaatgggggcaaaggaatctctgagtttgaggccagcttgatccgcatagtga 60
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 786 agttggaaaatgggggcaaaggaatctctgagtttgaggccagcttgatctgcatagtga 727
Query: 61 gttccgggataggcagtgctacaaagtaagatcacatctcaaacgaagacatagggagaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 726 gttccgggataggcagtgctacaaagtaagatcacatctcaaaagaagacatagggagaa 667
Query: 121 gaggatagctttcccacaagtttgagttctaaacgcataacctcttgctagttcattgta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaggatagctttcccacaagtttgagttctaaacgcataacctcttgctagttcattgta 607
Query: 181 gaggaaggaaggagttgagatgcgggaataattcggggcttcacggcccatggagaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaggaaggaaggagttgagatgcgggaataattcggggcttcacggcccatggagaagga 547
Query: 241 cagtagtgcagggagggactggaaggcctgataccgagatggggatgaagcccaggcgat 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagtagtgcagggagggactggagggcctgataccgagatggggatgaagcccaggcgat 487
Query: 301 ttgacttactctgagaagtcttgactc--tttttaagtgtgggttcaggaaagcta-ccc 357
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 486 ttgacttactctgagaagtcttgactctttttttaagtgtgggttcaggaaagctagcct 427
Query: 358 ctcattccacccctttgctctatctcactgccaaagtgggagctgtgacaaatgctgcca 417
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcattctacccctttgctctatctcactgccaaagtgggagctgtgacaaatgctgcca 367
Query: 418 cgaacctctgcatcactggagacctgactcggagccaagcatcttaacttggctg 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgaacctctgcatcactggagacctgactcggagccaagcatcttaacttggctg 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 875
Length adjustment: 10
Effective length of query: 462
Effective length of database: 865
Effective search space: 399630
Effective search space used: 399630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
