BAC Information

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BAC

Clone NameMSMg01-418K06
Chromosome3 (Build37)
Map Location 94,200,529 - 94,335,312
singlet/doubletdoublet
Overlap geneRorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27
Upstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659
Downstream geneLOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K06.T7 (MSMg01no418_k06.b1)MSMg01-418K06.TJ (MSMg01no418_k06.g1)
ACCAG513928AG513929
length737809
length of high quality
(start - end)		217 (79 - 295)521 (147 - 667)
definitionCHROMAT_FILE: MSMg01no418_k06.b1 PHD_FILE: MSMg01no418_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:53 2005CHROMAT_FILE: MSMg01no418_k06.g1 PHD_FILE: MSMg01no418_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:54 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(94,335,096 - 94,335,312)(94,200,529 - 94,201,049)
sequence
GCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCCCGTCTCACCAGGTATACAATGTTTACATGGCT
GGGAGGCAGCTGTGTTCTAAGCGGTACCGGGAGTTTGCCATACTGCACCA
AAACCTGAAGAGAGAATTTGCCAACTTTACATTTCCTCGACTTCCAGGAA
AGTGGCCATTCTCATTATCAGAACAACAATTGGATGCCCGGCGTCGTGGG
TTGGAAGAATATCTAGAAAAGGGTAAGCGAGGCTTCATTTCTCAGCAGGT
AAAGGCACTTGCCACCAAAGCTAATGACTCTGAGGTAGAAGAAAAGCAAC
TCACACAGGCTGTCCTATCACCACCGTTTATTTGCAATGATGGTTTTGTG
CCCTACCCAAACGGGTGAATAAATAAATGTAAGTTTTAAAAATGTTCAAA
AGGGCTGTGTGGTTATGGCGCACACCTTTACTCTCAGCACTTGTGAGGCA
GAGGCAGGTGGATTTCTGAGCTCTTGGCCAGCCTAGTCCATCGAGTGAGC
TCCCGCACTGCCTGTTCTACTCACTAATACCCCGTCTCTACCAACTACTA
AACACATAACCTAACACCTCAGACTGCAATCTAGTTCACTTAATTCTTAC
ATCGCTTCACGGTCCAACCTTCTAATTCCTTTATTGCTTAATCTGCCCCT
TCCCACTTATTCCGTATCCCCAAGTTATCTTTGTTAN

GATGATGGGAGCAAGGGAGGGNAGAGAGGAGAGGGGAGAGGAGAGGGGGG
GNNNNNGGGAGGCGGACTAGCAATGATANTXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCA
TTCATGCCAGGGACAGAAGATACATAGTGGCAAAAAGACAGATGGACTTT
ATCTAAGTACATGTGGGGCAGGAAGGCAGACAGACTGGATCCTTTTTTCT
ACAGTGTGGCAAATGCTACACAAAGGGAAGCCAACAGGACTTTTGCCCAG
CAAGGGATGGGGATGATATTCTCAGAGGAGATAACACTTGAATTAGCAAA
ATAAGAGTTAGCAGAGCCTCACCCTCCAGATGAAGAAACAACATGAACAA
AGGCAAAGGGCCATGGGAGCAAACACAATTCATTCTGGGGTAGGCAGAGC
CATTGATGCCATCATTCAAGCATGTCCTTGCTCCAAGCACAGTCCTGAAG
GTACAGAAATGACCATCAAAATTGAAACTAGGAAAAGCTCACCTGTCTCG
TGTCAGTTCTAACTTAGCCTGAGGTTTCCAGATATGCATACATCTAACAA
ATGGGATTGGCTGCTCAAGTTGGGNCAAGGGTCGGGGAGGCATCAAGAAG
GGTCATCCTAGCTCAGTAACAGTGAGATGTGTTTGCTCTGCTAAGCACCG
AAGTACTCATTCCCTCATAACCTATCCTCAGCTGGCACCCTAAGGGGAAA
CTCCGGAAACTGTGAAGCCCAAATGTGGTAAAAGATGGCCGAACTTTCCA
GCACCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k06.b1 MSMg01no418_k06.b1 CHROMAT_FILE:
MSMg01no418_k06.b1 PHD_FILE: MSMg01no418_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:53 2005
         (217 letters)



>mm_chr3_94334896_94335512
          Length = 617

 Score =  412 bits (213), Expect = e-120
 Identities = 216/217 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtatacaatgtttacatggctgggaggcagctgtgttctaagcggtaccgggagtttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggtatacaatgtttacatggctgggaggcagctgtgttctaagcggtaccgggagtttgc 358

                                                                       
Query: 61  catactgcaccaaaacctgaagagagaatttgccaactttacatttcctcgacttccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 catactgcaccaaaacctgaagagagaatttgccaactttacatttcctcgacttccagg 298

                                                                       
Query: 121 aaagtggccattctcattatcagaacaacaattggatgcccggcgtcgtgggttggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaagtggccattctcattatcagaacaacaattggatgcccggcgtcgtgggttggaaga 238

                                                
Query: 181 atatctagaaaagggtaagcgaggcttcatttctcag 217
           |||||||||||||||||||||| ||||||||||||||
Sbjct: 237 atatctagaaaagggtaagcgatgcttcatttctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no418_k06.g1 MSMg01no418_k06.g1 CHROMAT_FILE:
MSMg01no418_k06.g1 PHD_FILE: MSMg01no418_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:54 2005
         (521 letters)



>mm_chr3_94200329_94201249
          Length = 921

 Score =  986 bits (510), Expect = 0.0
 Identities = 518/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattcatgccagggacagaagatacatagtggcaaaaagacagatggactttatctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcattcatgccagggacagaagatacatagtggcaaaaagacagatggactttatctaa 260

                                                                       
Query: 61  gtacatgtggggcaggaaggcagacagactggatccttttttctacagtgtggcaaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacatgtggggcaggaaggcagacagactggatccttttttctacagtgtggcaaatgc 320

                                                                       
Query: 121 tacacaaagggaagccaacaggacttttgcccagcaagggatggggatgatattctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacaaagggaagccaacaggacttttgcccagcaagggatggggatgatattctcaga 380

                                                                       
Query: 181 ggagataacacttgaattagcaaaataagagttagcagagcctcaccctccagatgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagataacacttgaattagcaaaataagagttagcagagcctcaccctccagatgaaga 440

                                                                       
Query: 241 aacaacatgaacaaaggcaaagggccatgggagcaaacacaattcattctggggtaggca 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaacatgaaccaaggcaaagggccatgggagcaaacacaattcattctggggtaggca 500

                                                                       
Query: 301 gagccattgatgccatcattcaagcatgtccttgctccaagcacagtcctgaaggtacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagccattgatgccatcattcaagcatgtccttgctccaagcacagtcctgaaggtacag 560

                                                                       
Query: 361 aaatgaccatcaaaattgaaactaggaaaagctcacctgtctcgtgtcagttctaactta 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgaccatcaaaattgaacctaggaaaagctcacctgtctcgtgtcagttctaactta 620

                                                                       
Query: 421 gcctgaggtttccagatatgcatacatctaacaaatgggattggctgctcaagttgggnc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gcctgaggtttccagatatgcatacatctaacaaatgggattggctgctcaagttgggtc 680

                                                    
Query: 481 aagggtcggggaggcatcaagaagggtcatcctagctcagt 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagggtcggggaggcatcaagaagggtcatcctagctcagt 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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