BAC Information

Click to search

BAC

Clone NameMSMg01-418K10
Chromosome3 (Build37)
Map Location 142,123,891 - 142,124,136
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
Downstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K10.T7 (MSMg01no418_k10.b1)MSMg01-418K10.TJ (MSMg01no418_k10.g1)
ACCAG513936AG513937
length769783
length of high quality
(start - end)
246 (75 - 320)535 (126 - 660)
definitionCHROMAT_FILE: MSMg01no418_k10.b1 PHD_FILE: MSMg01no418_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:54 2005CHROMAT_FILE: MSMg01no418_k10.g1 PHD_FILE: MSMg01no418_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTTCTATAATTGCGGCCGCTATACGAATCACTTTTCAGAGAGGAGGCG
CGGAATTCTGATATTTCCCTATCATTTTTATAGTGGGATGTAACCAAACA
ACCATAAGAAAAAATTGGCTTTTTAAAAAGTAACTACATACTCACGGGGT
TAGGGAGCCCAAAAAGGTAATAGATGTTTTAGGATGCAGTTCTGCATAAG
TAGAAGTTTATATTCACATTTTTCTTTAAATCTAGTATACATCCATTTGC
ATGCATAATTCATGATGTCCTTATTTTTAAAAGCTGAATAGTATGACTGA
GGTAACCCAGATCCCAAAGGATATGTTTAGCATGTACTCACTGATAAGTA
GATATTAGCTAAAATGTACAGAGTATCCATGATGCGCCCTACAGATCCCC
AAGGAGTTAAACAAGACGGAAGAACCAAGTGAGGATGCTTAACTGCCACT
TAGAAGGGGGAACAAAATAACCCTGGGAGACAGAGGAAGGCATGCAGAGG
TGTGGCTTTACTTCCTTTCCCTCAATCCTTCCCCTCTCCTTTCTCTTATC
CTTTTCTCACCCTTCTTTCCTCTTTCATTTACATCCTGCCTCATTTCCCC
GCCTTTTCCCTCTACCCTTACGTCCCCTTCCCTCATGTTCTACCTTATCG
CTCCTCCATTACAGTCCCTTTCCGCCTTCGCGTCCCTTTATCACAACCTT
CGATCTCCTCTTTTTTCCTCCCTTTTCCTTCTTTTTTCCCCTGTATCCCC
CCCATTTTCCTTCCTTTTN
GGAGAGATGGTATGAGAGNAGGCTCAGGGNAGGGGGNNGTGTAGCGACCG
AGCGATGATATGGGAGGCCTGGCGGCCGCCTGTTTCAAAACAGGXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAA
TCAAAACAACCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCTTATTATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGTAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCTAACCTAGGATACCCAAGATATAATATAAAATTTTG
CTAACACATGAAACTCTAGAAAAATGAAGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k10.b1 MSMg01no418_k10.b1 CHROMAT_FILE:
MSMg01no418_k10.b1 PHD_FILE: MSMg01no418_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:54 2005
         (246 letters)



>mm_chr3_142123691_142124336
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tttt-atagtgggatgtaaccaaacaaccataagaaaaaattggctttttaaaaagtaac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatagtgggatgtaaccaaacaaccataagaaaaaattggctttttaaaaagtaac 260

                                                                       
Query: 61  tacatactcacggggttagggagcccaaaaaggtaatagatgttttaggatgcagttctg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tacatactcacggggttagggagcccaaaaagataatagatgttttaggatgcagttctg 320

                                                                       
Query: 121 cataagtagaagtttatattcacatttttctttaaatctagtatacatccatttgcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataagtagaagtttatattcacatttttctttaaatctagtatacatccatttgcatgc 380

                                                                       
Query: 181 ataattcatgatgtccttatttttaaaagctgaatagtatgactgaggtaacccagatcc 240
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 aaaattcatgatgtccttatttttaaaagctgaatagtatgagtgaggtaacccagatcc 440

                 
Query: 241 caaagg 246
           ||||||
Sbjct: 441 caaagg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)