BAC Information

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BAC

Clone NameMSMg01-418L21
Chromosome3 (Build37)
Map Location 86,849,951 - 86,850,443
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
Downstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418L21.T7 (MSMg01no418_l21.b1)MSMg01-418L21.TJ (MSMg01no418_l21.g1)
ACCAG514006AG514007
length772769
length of high quality
(start - end)		500 (49 - 548)436 (77 - 512)
definitionCHROMAT_FILE: MSMg01no418_l21.b1 PHD_FILE: MSMg01no418_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:01 2005CHROMAT_FILE: MSMg01no418_l21.g1 PHD_FILE: MSMg01no418_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATGTGTTCCAGGCTGGTCTTGAACTCACAGAAATCTACT
TGCCTCTGCCTCAGAAAATAATTTTTTATCCTGAAAAAAAAATAAACACA
TTCAAGAGGTTATAGGGGAAATGCAAATAATGTTAGAAAAGTAGCTAACT
AAGTAATAGGAAAATAAGGGTACAGGATCAACAAATGACAGGAATGAACA
CATGCCTTCGATAACAGTTCTGAACAGTCTCAGCTCCCCAATCAAGTCAT
ACAGGGCGCCAGTGACACGGATCAGCAAGTCAATGATCGCTGCGTAAGTC
AATGATCTGAGTTTGATTCCTGGAATCCATATAAGGGTAGAAAAAGAGAA
CCAACTCTACACAATTATCTTCAACCTCCACACATATGCTTTGATGTACA
CACACACACACACACACACACACCCCATACACACACCATACACACACACC
CCACATACACACCCCATACACACACCCCATACACATACCTTACATATACA
GAGACACACCGAAACAGACAGTATACACACACCATACACACACACCGGAC
ACATACCATACCTATATTACAACATACCGAAACATATCCTTACCCCCCCC
CCCCATACACTCCCACCATACCTAACTTAAAAAAACACTTTCTCCTACCC
TTTTATTTTATATACCCCCCNCAGTGGTGAGGAATAATAAAATTTTTAAC
AAATCTTTTTAAAATTGGCTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTACCCTAGACCTCTACCAAGA
AGTTAACATCAAAGTCACCTGTGATCTCAGTTGGTTCCCTCTTGACCTAC
CAGAGCCTTTCGCAGTTGGCCACTGTCTCCACCTTGAGGTCCTCTCTCTC
TTTTTTTTAATTACCAGGACATCGATGTCCCTGGACTTTCTCATTCTGCT
TTTCTTCAGTCCCCTCTTGTCTCCTTGTCCTATAAACATTAGGCAGAGCA
CCTCCAACTTCAATCCATGGGCTTCTTCTCCTTTCTTTTTTCTTTTGTCT
TGTTTTGTTTTGTCGAGACAGGGTTTCTCTGTGTAGCTTTGGCTGTCCTT
GCTTTGTAGACCAGGTTGACCTGATCAGACTGATGCCTTGGTTCCATTCT
CTCTCGAGCCACCTAGCCCCCCCTCTTCTCTTCCAGATTCCAAGATGCCT
CCCAGGCTAGAACCCAGACATGTGGGCCGCTGGCCGGNCTCAACACTTCA
ACAGCGTTCTCATCTTAGGTTCTTAGAAATGGATTCAGATTTCGTAAGAT
GGAGCTCTTTATATGTGGAATCATGGCTTCAAAACACCTTTCCTGTTGGC
CCAGGGCAAATGCCCAATTTCTCTTTAAAGGGGGCTCCCCCCCTTAACAT
TTACAGCTCCTTCCAACCCTGGGCATCTGGTGAGGTAAAATTGGTGCGCC
TATTTTTTCTCTACAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_l21.b1 MSMg01no418_l21.b1 CHROMAT_FILE:
MSMg01no418_l21.b1 PHD_FILE: MSMg01no418_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:01 2005
         (500 letters)



>mm_chr3_86849748_86850648
          Length = 901

 Score =  882 bits (456), Expect = 0.0
 Identities = 486/498 (97%), Gaps = 6/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgtgttccaggctggtcttgaactcacagaaatctacttgcctctgcct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatgtggtccaggctggtcttgaactcacagaaatctacttgcctctgcct 263

                                                                       
Query: 64  cagaaaataattttttatcctg-aaaaaaaaataaacacattcaagaggttataggggaa 122
           |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 264 cagaaaataattttttatactgaaaaaaaaaataaacacattcaaaaggttataggggaa 323

                                                                       
Query: 123 atgcaaataatgttagaaaagtagctaactaagtaataggaaaataagggtacaggatca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgcaaataatgttagaaaagtagctaactaagtaataggaaaataagggtacaggatca 383

                                                                       
Query: 183 acaaatgacaggaatgaacacatgccttcgataacagttctgaacagtctcagctcccca 242
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 acaaatgacaggaatgaacacatgcctttgataacagttctgaacagtctcagctcccca 443

                                                                       
Query: 243 atcaagtcatacagggcgccagtgacacggatcagcaagtcaatgatcgctgcgtaagtc 302
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 atcaagtcatacagggcgccagtgacatggatcagcaagtcaatgatcgctgcgtaagtc 503

                                                                       
Query: 303 aatgatctgagtttgattcctggaatccatataagggtagaaaaagagaaccaactctac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgatctgagtttgattcctggaatccatataagggtagaaaaagagaaccaactctac 563

                                                                       
Query: 363 acaattatcttcaacctccacacatatgctttgatgtacacacacacacacacacacaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 564 acaattatcttcaacctccacacatatgctttgatgtacacacacacacacacacacac- 622

                                                                       
Query: 423 caccccatacacacaccatacacacacaccccacatacacaccccatacacacaccccat 482
              |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 623 ---cccatacacacaccatacacaccc-ccccacatacacaccccatacacacaccccat 678

                             
Query: 483 acacataccttacatata 500
           ||||||||||||||||||
Sbjct: 679 acacataccttacatata 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space:   436590
Effective search space used:   436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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