BAC Information

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BAC

Clone NameMSMg01-418L22
Chromosome3 (Build37)
Map Location 9,331,923 - 9,332,325
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10
Downstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418L22.T7 (MSMg01no418_l22.b1)MSMg01-418L22.TJ (MSMg01no418_l22.g1)
ACCAG514008AG514009
length784768
length of high quality
(start - end)		480 (48 - 527)466 (77 - 542)
definitionCHROMAT_FILE: MSMg01no418_l22.b1 PHD_FILE: MSMg01no418_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:01 2005CHROMAT_FILE: MSMg01no418_l22.g1 PHD_FILE: MSMg01no418_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGACACTGTTCCCACCTATGGATCCATCCTATATACAGTTGTC
AAACCAGGATGCTATTGTGAATGCTGGGAAGTGTTTGCTGATGGAAACCT
GATATGGCTGTCTCTTGAGAGACTCTGCCAGAGCCTATCAAATACAGAGG
GGGATGCTCACAGCCAACCATTGGACTGAAGGAGCTGAGGGGGTTTGCAG
CTTCATGGGAGAAGCAACAGTGTCAACCAGCCAGATCCCCTAGAGCTCCC
AGGGACTGGACCACCAACCAAAGAGTCCTATGGAGGGACCCATGACTCAG
GCTGCATATGTGGCGGAGGACGGCCTTGTTGGAATCAGTGGGAGGAGAGG
CCCTTGAGCATGAGAGGATTCAATGCCCCACTGGAGGGTGATGCCAAGGC
TGGAAGGTGGGAGTGAGTGGATGGGCGGNTGAGCACCCTCATAGAAGCAG
GGGGAGGGAGCATGGGATAGGGAGTTTCCAGAGGGGAGACCTGGAAAGTG
ATTACATTTCGAATTGTAGAAAACATCCCTACAGCGGGGGGGGGTAAAAA
GGATATACAATCTTCGCCCGTCATGGCCACTTATTTACGCATATATCGTG
TGGGACCCCGCCCCCTCACTTTTTTTTTTTTACTTTACCTGGACCGGTGA
TGGCTCAACCATCCTCTTTTGACTACCGCATCCTCATCTTTTCTCCTAAC
TGCCCGCATCACGCCCCCTACGTGATTATCAATC

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTCCAATGTCACAGACCTAGAA
AACACTGAAAGTCCCCAGTACAGATCCTAGAGCAGTCACTGCCTCACCAG
GGACAGAGACAGGGACAGTTCGTTTGCAGTGAGCAGCTGCAATTTAGCTA
GAGATCCAAGGAGGCTAAGTGCTTTGCCTATGTTTCCTTCTGCTATCCCT
ACATAGCAGAATTCTGTTATCCCTAGAAAGAATTCTTTTCAAAAACATAA
TATTGAAACAGCATACTGTCTCACAGATAATCACATACAAAAGTTAAAAA
CACGTGACTTTTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG
CTATTGGACGGATCACAGAGCCCCCAATGGAGGAGCTAGAGAAAGTACCC
AAGAAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACATTATGAACT
AACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCANAAGATG
GCCTAGTCGGTCATCACTGGAAAGAGAGGTCTATTGGGCTTGCAAACTTT
ATATGCCTCAGTATAACAGGGGCAAGAAATGGGAGTGAGTGGTTAGGGGA
ATGTAATTNNCNCTTTTTTTTTTCTGTTACCCCCCCTGTCTTTCTATCCT
CCTACACATAACTTATATCCTCCTATTATTTACTCTCGATCATACTCTGT
GTTACTTTACTATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_l22.g1 MSMg01no418_l22.g1 CHROMAT_FILE:
MSMg01no418_l22.g1 PHD_FILE: MSMg01no418_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:02 2005
         (466 letters)



>mm_chr3_9331723_9332593
          Length = 871

 Score =  675 bits (349), Expect = 0.0
 Identities = 389/405 (96%), Gaps = 9/405 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctccaatgtcacagacctagaaaacactgaaagtccccagtacagatcctagagcagt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctccaaggtcacagacctagaaaacactgaaagtccccagtacagatcctagagcagt 260

                                                                       
Query: 61  cactgcctcaccagggaca--ga----gacagggacagttcgtttgcagtgagcagctgc 114
           |||||||||||||||||||  ||    ||||||||||||| |||||||||||||||||||
Sbjct: 261 cactgcctcaccagggacagggacagggacagggacagtttgtttgcagtgagcagctgc 320

                                                                       
Query: 115 aatttagctagagatccaaggaggctaagtgctttgcctatgtttccttctgctatccct 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttagctagagatccaaggaggctaagtgctttgcctatgtttccttctgctatccct 380

                                                                       
Query: 175 acatagcagaattctgttatccctagaaagaattcttttcaaaaacataatattgaaaca 234
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatagcagaattctgttatccctagaaagaattcttttcaaaaacataatattgaaaca 440

                                                                       
Query: 235 gcatactgtctcacagataatcacatacaaaagttaaaaacacgtgacttttggggccta 294
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 441 gcatactgtctcacagataatcacatacaaaagttaaaa-cacgtgacttttggggcct- 498

                                                                       
Query: 295 g-caaacacagaagtggatgctcacagtcagctattggacggatcacagagcccccaatg 353
           | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 499 gacaaacacagaagtggatgctcacagtcagctattggacaaatcacagagcccccaatg 558

                                                        
Query: 354 gaggagctagagaaagtacccaagaagctaaaggggtctgcaacc 398
           ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 559 gaggagctagagaaaatacccaagaggctaaaggggtctgcaacc 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 871
Length adjustment: 10
Effective length of query: 456
Effective length of database: 861
Effective search space:   392616
Effective search space used:   392616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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