BAC Information

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BAC

Clone NameMSMg01-418M11
Chromosome3 (Build37)
Map Location 58,697,916 - 58,698,158
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1
Downstream geneLOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418M11.T7 (MSMg01no418_m11.b1)MSMg01-418M11.TJ (MSMg01no418_m11.g1)
ACCAG514034AG514035
length737718
length of high quality
(start - end)
244 (79 - 322)276 (55 - 330)
definitionCHROMAT_FILE: MSMg01no418_m11.b1 PHD_FILE: MSMg01no418_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:04 2005CHROMAT_FILE: MSMg01no418_m11.g1 PHD_FILE: MSMg01no418_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATAAGTTGGCACCTTCTACCATTAATTAAAATGCAATAAA
CTAGTCCTTTAAAAACTCTAAATATCTCTTAAGTATGATTGCAGAAAAAC
CATATATCAAAAGATACAGAACATCATGACAGAGTAGGACTTTGGGGGAA
AATGTAAACATTTTAAGGCATGTTTAATAATTTTAAAATGAAGTAAAATA
TAAATTATTTAATGTGTAGCAAGTGCTAATTGGTGGGACTGTGGATATCT
TAAAACATCTTTAATATTATATTTTTCTAGAGAAGCATTTTTATAGTTCA
GAAAGCAATTATACCTTGAATAGGAAGTACTATATAAAGAATAACTAACA
CTATTAAACATTCCTTATATGACCGGCACTATTTCAAAATTTTCCATCTT
TTCAATCCCATGATAAGCCTTCATGCTGATCATTAGTATGGGTTGCCAGT
CTGATGGACTCTGAAGCCAGCTAAGACGTAAGTCCTTTGGCACATTTTGA
GGGAATTCTCTTGATTAGGTTAATTGAAGTGGGACTAACCACCTTAGCTT
GAGTGGCAGCATCTATGAAGATCTACGATAAAAGCTTTTGCTTCTTGCCT
GTTTGCCTTTTCCGCCCTGCTGTTCCTCTGCCTTGTAGCCACTGATACCA
CTGCATATATTGTTGCTTACCTTTTTTGCCTTTTTAT
TGGCGGCCGCCTTTTCACGACTGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCACCTCTTGTTCTGAAGGCAGATAGGAGAAGACTGACTTCCAGGCA
GCTAGGATGAGGTCTTTTTTTAAAAAAAAAATTTTAATTTGTGTATGTGA
GTACACTGTAGCTGTTTTCAGACATACTAGAAGAAGGCATCAGATCCCAT
TACAGATGGTTGTGAGCCACATGTGGTTTACACCAATTCCCACCTTGAGG
TTGCTGGGAATTGAACTCATGACCTCTGGTAGAGCAGTCAGTGCTTTTAT
CCTCTGAGCCATCTTTCCAGCCCTAGTATAAAGGTCTTAAAGTCCATACC
CACAAAGTCATACTTCCTCCTACATAGCCACACCTACTCCAGGGAGGTCA
CACCTCCAAATAGTGCCACTCTCTGGGACAAGCATATACAAACCATCACA
GGGGCTATCATTGAGTCATAATGAAAGACTTGTACTACTTAGAGATCCTC
TGACTCCATACTAGATAGCATGTGATTTTTCCCGCTGGCTCTTCCAGCTG
CCTTTCTTGTATTCCTCCTTTCTTTTTTAGATTCCTCTCGCTGCTTCTTT
TCTCTCACAGTTTTCATGTTCCCACCAATCTATCGTTTCCTTTTCTTCCT
TCTTACTTTTTTCTACGTCCTTTTCTTCTCCCCTTATTCTTGCTTTTTCC
CCACTTTTTTCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_m11.b1 MSMg01no418_m11.b1 CHROMAT_FILE:
MSMg01no418_m11.b1 PHD_FILE: MSMg01no418_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:04 2005
         (244 letters)



>mm_chr3_58697815_58698458
          Length = 644

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattaattaaaatgcaataaactagtcctttaaaaactctaaatatctcttaagtatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 344 ccattaattaaaatgcaataaactagtcctttaaaaactctaaatatctctcaagtatga 285

                                                                       
Query: 61  ttgcagaaaaaccatatatcaaaagatacagaacatcatgacagagtaggactttggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgcagaaaaaccatatatcaaaagatacagaacatcatgacagagtaggactttggggg 225

                                                                       
Query: 121 aaaatgtaaacattttaaggcatgtttaataattttaaaatgaagtaaaatataaattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aaaatgtaaacattttaaggcatgtttaataattttaaaatgaagtaaaatataaattat 165

                                                                       
Query: 181 ttaatgtgtagcaagtgctaattggtgggactgtggatatcttaaaacatctttaatatt 240
           ||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct: 164 ttaatatgtggcaagtgctaattgttgggactgtggatatcttaaaccatctttaatttt 105

              
Query: 241 ata 243
           |||
Sbjct: 104 ata 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)