NTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCCATACCTAACCATGATAAAAGCAATCTACAGCAAA
CAGTAGCCAACATCAACGTAAATGGTGAGAAGCTTGAAGCAATCTCACTA
AAATCAGGGACTAGACAAGGCTGTCTGCTCTCTCCATACCTATTCAACAT
TGTACTTGAAGTCCTAGCCAGAGCAATTCAACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAAGAGAAAGTCAAAATATCACTTTTTTTTGCAGAT
GATATGATAGTATATATATGTGACCCTAAAAATTCCACCAGAGAACTCCT
AAAACTGATAAACAGCTTCGGAGAAGTAGCAGGATATAAAATTAACTCAA
ACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGTTGAGAAAGAA
ATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCT
TGGCCTGACTCTAACTAAGGAAGTGAAATATCTGTATGATAAGAACTTCA
AGTCTCTAAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTC
CTATGCTCATGGATTGGCCGGATCAACATTGTATTAATGGCTATCTTGCC
AAAAGAATCTACATATTCAAGGCAATCTCCATCTAAATTCCAACTCAATT
CTTCAATGAATTAGAAAGAAGAAACTGCTAATTCTTCTTGGAAACCAAAA
AACCTATGATAGCAA

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGACTGGGGGTTTGATGGGCTTTA
CATAAATACTTTTTATGCTGTGTGAGCTTTCATTCAAATCAAGAACATGT
TGGTGATTGGAGAGTAGGGCTTTGGATTCAGAAATTCGGAAAATGAAGTA
AGTTGGATGCTTTTATCAAAACTGGAGGAAAAGTAATTGGGATAAAAATA
TGTGCTGATAAGAATATGAGTTTAGGAGTTCTCAAAGACATGTTAAGTGA
TCAGAGTAATTAGCAAAAATAAAATATCTGCTGGTGAGGTGTCTTTAGAA
ATAATGAGATGTTAAGTGTTCAATTTCATTAACTTCAGCATTTCTTTCTT
GGCAAAACATTCATAAAAGTAAAATAAAAGGGCAGTATGTACAATTCTTA
TTATGTATATGATGATTTCTGAGCAGGCTGATTCTAATGGCTTAGGCTGG
CACACCCAGTGTGTAAAAGGTCCTGGCAATAAAGGCCCTGTTTCAGTACC
ACTGGAGAAATGGCTCACTCACTGTAAACTAATAGGATAATAATGAATGC
TGCTCCTGCTGCTTGGTGTATGGGTAAACAGAGGAAGAGTTGTACCCTCT
GAGGGTACCAGTAAAGAAGAGAAAGTTGAGTGTGAACCCAAGACACATGT
AAGTCTTGGGTAGCATAAGTAGGGAGTGAAATTAGTTGTAAATAATCCTG
AAC

Query= MSMg01no418_n03.g1 MSMg01no418_n03.g1 CHROMAT_FILE:
MSMg01no418_n03.g1 PHD_FILE: MSMg01no418_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:07 2005
         (543 letters)



>mm_chr3_4562464_4563406
          Length = 943

 Score = 1019 bits (527), Expect = 0.0
 Identities = 539/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagactgggggtttgatgggctttacataaatactttttatgctgtgtgagctttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agagactgggggtttgatgggctttacataaatactttttatgctgtgtgagctttcatt 684

                                                                       
Query: 61  caaatcaagaacatgttggtgattggagagtagggctttggattcagaaattcggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caaatcaagaacatgttggtgattggagagtagggctttggattcagaaattcggaaaat 624

                                                                       
Query: 121 gaagtaagttggatgcttttatcaaaactggaggaaaagtaattgggataaaaatatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 gaagtaagttggatgcttttatcaaaactggaggaaaagtaattgggataaaattatgtg 564

                                                                       
Query: 181 ctgataagaatatgagtttaggagttctcaaagacatgttaagtgatcagagtaattagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 563 ctgataagaatatgagtttaggagttctcaaagacatgttaagtgatcagagtagttagc 504

                                                                       
Query: 241 aaaaataaaatatctgctggtgaggtgtctttagaaataatgagatgttaagtgttcaat 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaaataaagcatctgctggtgaggtgtctttagaaataatgagatgttaagtgttcaat 444

                                                                       
Query: 301 ttcattaacttcagcatttctttcttggcaaaacattcataaaagtaaaataaaagggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcattaacttcagcatttctttcttggcaaaacattcataaaagtaaaataaaagggca 384

                                                                       
Query: 361 gtatgtacaattcttattatgtatatgatgatttctgagcaggctgattctaatggctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtatgtacaattcttattatgtatatgatgatttctgagcaggctgattctaatggctta 324

                                                                       
Query: 421 ggctggcacacccagtgtgtaaaaggtcctggcaataaaggccctgtttcagtaccactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggctggcacacccagtgtgtaaaaggtcctggcaataaaggccctgtttcagtaccactg 264

                                                                       
Query: 481 gagaaatggctcactcactgtaaactaataggataataatgaatgctgctcctgctgctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gagaaatggctcactcactgtaaactaataggataataatgaatgctgctcctgctgctt 204

              
Query: 541 ggt 543
           |||
Sbjct: 203 ggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)