BAC Information

Click to search

BAC

Clone NameMSMg01-419A05
Chromosome3 (Build37)
Map Location 130,655,704 - 130,656,070
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A05.T7 (MSMg01no419_a05.b1)MSMg01-419A05.TJ (MSMg01no419_a05.g1)
ACCAG514214AG514215
length908716
length of high quality
(start - end)
---372 (72 - 443)
definitionCHROMAT_FILE: MSMg01no419_a05.b1 PHD_FILE: MSMg01no419_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:23 2005CHROMAT_FILE: MSMg01no419_a05.g1 PHD_FILE: MSMg01no419_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCGTGGTCCCTCCCGCGGTGCTTGGCGTACCCGCGCGTCGATTTCTATT
TGCCGCCCGTGAAGGCGTGAGTGAGCTACTATTATCCTATGAGCAAACAC
ACGCCGCCTCTAGTGATTTCATAACCTTCACGATATAAAAAAGCCCCGAC
AAAATAATATTACGTCCGAATCTAACCGCTGTCGTGGTTCGCCCTCACGC
TTTTATATTAATGACCGGGCGTACTGAAACCGTAGTACATTATCGCCGCG
CCCCCGCAATCTTATTGTAATTACTTTTACTCCTGCGTAACTACAACTTT
AATATTAGGCCCTCGCGCAACATCTATATTCGATTAAACACCATCCCACC
TAATTTTTCGCGTCTTATATCTGCCGATTAAAAGAGAAAGAAAGGAAACA
CGCCTATGATCTACATTTATTCTCAACAAAAAAAAAACAAACATTCTTAG
CGGCGCCACTNTTCCCCCCCGTCCTTTTTCTTCCCGCCCACACAACGTAT
CTTGAAATACGGGTTTGTAGCACAGTTTTCGCAGATTGACACTCCGATTA
TTGTATTTTTACGACCCCCCGCGCGCGGCGTAATTCATTACCACCGTTAT
AGCGTACACCATCGCAGAGTCGAGATAACAGGCGCCCCGCCAATTAACGA
AACACGGCGCCTAAGAAACAACGAATAAAATTCGCCACATACCCATCGCA
TAAATATCGGAACACTACGTAGGATGCAACCGACACGTTCGTTGATGATG
CGCCCCTTTCGGCTCGCACCCCATTAATTTATACACTCACACATCGCCGC
ACTGTTGCCCAACCAAATTAAAGGCACACGAGTTCCCCTTATTTTTTCCT
ATTTTCTTTNTGGGCCGCCGCCTTGTTAGGGAGAGGAGCACAATAGAGAT
TAGACGAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTTGAACTCCATCTGGCTAAGGCCTCA
GCAAAGCCTTTCTCTCCTTTTCCAGACACCAAACAGCAGCAGACATGGAA
CTCCCACCCATATCAACAATCCTAACAACCCTAACAATGGACAAGTCTAA
CAAGCTTCGGGGGGGGGGGCGGGGGCGGCACTCACAGAATAGCATTTCTT
CCTTCTTCCAAATGTTATGTTTCAAAATATGGTATATGTGATGGACTAAA
GAATCGCTATATTTGGGAAAGGAGTCTGTTCCTTCCCAGAAAACACAGGG
GTAAGCAGTGGAAGGAAAACTAAGATTAAGAAAATGGGAAGTTNTTCTTC
TGTGGATAAGCATCAAGAAGCCTCCTGCAGCGTTCGTTCCCTGGGGATGC
CTGGGTGCCTGCCGTTCTGTCTCCCTATGGAATTTCCGCACTGGCTTCCC
CTTAAAATTGGGGGGGGGAACTTCAAAAACCAAGAAACCCGGGGGGGGGT
TTTTCGGGGAGAAAAAAAAATCTGGGTGTAGATGGTAAAAAAAAGTCTTT
CCTCCCCCCTTAATAAATAGAGAGGGGTTATTTTTTAATCTGTGGGGTGG
GGGCGGGGAATAATACAATTCTCTCCCTCGTGGGGAGTACCCCCTTTTTG
CGTTGGTGGGAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a05.g1 MSMg01no419_a05.g1 CHROMAT_FILE:
MSMg01no419_a05.g1 PHD_FILE: MSMg01no419_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:23 2005
         (372 letters)



>mm_chr3_130655346_130656111
          Length = 766

 Score =  615 bits (318), Expect = e-180
 Identities = 360/374 (96%), Gaps = 9/374 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgaactccatctggctaaggcctcagcaaagcctttctctccttttccagacacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgtttgaactccatctggctaaggcctcagcaaagcctttctctccttttccagacacca 666

                                                                       
Query: 61  aacagcagcagacatggaactcccacccatatcaacaatcctaacaaccctaacaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aacagcagcagacatggaactcccacccatatcaacaatcctaacaaccctaacaatgga 606

                                                                       
Query: 121 caagtctaacaagcttcggggg-ggggggcgggg-gcggcactcacagaatagcatttct 178
           |||||||||||||||| ||||| |||||| |||  || ||||||||||| ||||||||||
Sbjct: 605 caagtctaacaagctt-gggggtggggggtgggcagccgcactcacaga-tagcatttct 548

                                                                       
Query: 179 tccttcttccaaatgttatgtttcaaaatatggtatatgtgatggactaaagaatcgcta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tccttcttccaaatgttatgtttcaaaatatggtatatgtgatggactaaagaatcgcta 488

                                                                       
Query: 239 tatttgggaaaggagtctgttccttcccagaaaacacaggggtaagcagtggaaggaaaa 298
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 487 tatttgggaaaggagtctgttccttcccagaaaacacaggagtaagcagtg-aaggaaaa 429

                                                                       
Query: 299 ctaagattaagaaaatgggaagttnttcttctgtggataagcatcaagaagcctcctgca 358
           ||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 428 cta-gatta-gaaaatgg-aagtt-ttcttctgtggataagcgtcaagaagcctcctgca 373

                         
Query: 359 gcgttcgttccctg 372
           ||||||||||||||
Sbjct: 372 gcgttcgttccctg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 766
Length adjustment: 9
Effective length of query: 363
Effective length of database: 757
Effective search space:   274791
Effective search space used:   274791
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)