BAC Information

Click to search

BAC

Clone NameMSMg01-419A11
Chromosome3 (Build37)
Map Location 11,976,788 - 11,977,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383826, EG667978, LOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A11.T7 (MSMg01no419_a11.b1)MSMg01-419A11.TJ (MSMg01no419_a11.g1)
ACCAG514226AG514227
length734727
length of high quality
(start - end)
382 (181 - 562)456 (68 - 523)
definitionCHROMAT_FILE: MSMg01no419_a11.b1 PHD_FILE: MSMg01no419_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005CHROMAT_FILE: MSMg01no419_a11.g1 PHD_FILE: MSMg01no419_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGTATCTTAATTGCGGCGCTATACGAATCCATATTCCGAAGAAGCGG
GAATCACNCGTTTCCCTAAATCTCTTTCAATGGAAATTTTTAATCCTTTT
AACACAATTATTTTGGGCCCTTCTGGGATGAACCTCCTGGCATAATAATA
ATGGCCTTTAAAATCCCATAAATCATTAAAATAACTTCAGTAGAGATGAA
ATGAGCAAAAAATACATGTCTTAAAAATCCTCATTATAGAGTACAAGACA
CCCATAAAATTACAGGTTATTATGCAGAAGGTTGATGATAGTGCTAGAGG
GTCAACTTCCTAATTATATTTTTGTAATATTAATAATAAAATCAATTTGC
ATTCCTAGAAAACTTATCAACCACTAGTAGAGAGATGCAACCTTAAGCAG
TGAAATTCCTGAGTTTTATCAAACTCAGTAATTTGTTAAGAATAATTAAT
ATAAAATATCAAGAATTAAATCTGTTTGCAAATTAATTGAAAATATTAAG
CTCACCACAGTGATTTCCAAATAGTATATGGATTACATATTCATTTTACT
GAATTAAATGCATTAAATACTTTATTTAAAATTATAACATGATTCCTGAA
GTTTTCGACTGCTTCTATTTTTGGCAGATTATACTACAAGCCTTTTGAAA
TATTTAGGCCTTTTGAATAATTTAGGCATTAGTCAAACAATCAGCTCTAC
CTTGCTGGGTAGCAGAAAAAATACTTTGTCAGTA
TGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAAGTCCACCATCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAG
CCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGG
CTTTTCCCCACTTTCTTTAAGATATAAGATACAATTTCCTAAACACATGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
AGTGGGAACAAAACATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGC
TGAGATGATAGGATGGACCATGTAGAGACTGCCATATCCAGTGATCCACC
CCATAATCAGCATTCATACGCTGACACCTTTGCATACTCTATCAAGATTT
TATCGAACGGTACCAGATGTAGTTGTCTCTTGTGAGATTATGTCGGGGTC
TATCAAAACAGATGTTGATGCTTACAGTTTTCTAATGTATGAATCTATTG
GTTCCAACGTATTACTTACACTACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a11.b1 MSMg01no419_a11.b1 CHROMAT_FILE:
MSMg01no419_a11.b1 PHD_FILE: MSMg01no419_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:24 2005
         (382 letters)



>mm_chr3_11976426_11977207
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataacttcagtagagatgaaatgagcaaaaaatacatgtcttaaaaatcctcattataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ataacttcagtagagatgaaatgagcaaaaaatacatgtcttaaaaatcctcattataga 685

                                                                       
Query: 61  gtacaagacacccataaaattacaggttattatgcagaaggttgatgatagtgctagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtacaagacacccataaaattacaggttattatgcagaaggttgatgatagtgctagagg 625

                                                                       
Query: 121 gtcaacttcctaattatatttttgtaatattaataataaaatcaatttgcattcctagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcaacttcctaattatatttttgtaatattaataataaaatcaatttgcattcctagaa 565

                                                                       
Query: 181 aacttatcaaccactagtagagagatgcaaccttaagcagtgaaattcctgagttttatc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 aacttatcaaccactagtagagagatgcaaccttaagcagtgtaattcctgagttttatc 505

                                                                       
Query: 241 aaactcagtaatttgttaagaataattaatataaaatatcaagaattaaatctgtttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaactcagtaatttgttaagaataattaatataaaatatcaagaattaaatctgtttgca 445

                                                                       
Query: 301 aattaattgaaaatattaagctcaccacagtgatttccaaatagtatatggattacatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattaattgaaaatattaagctcaccacagtgatttccaaatagtatatggattacatat 385

                                 
Query: 361 tcattttactgaattaaatgca 382
           ||||||||||||||| ||||||
Sbjct: 384 tcattttactgaatttaatgca 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)