Query= MSMg01no419_e04.b1 MSMg01no419_e04.b1 CHROMAT_FILE:
MSMg01no419_e04.b1 PHD_FILE: MSMg01no419_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:43 2005
(359 letters)
>mm_chr3_77918357_77919115
Length = 759
Score = 677 bits (350), Expect = 0.0
Identities = 356/358 (99%)
Strand = Plus / Minus
Query: 1 tttttattcaagatagtagagtttgcccaatattttcctgaattgacggtaaaaattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttttattcaagatagtagagtttgcccaatattttcctgaattgacggtaaaaattaat 650
Query: 61 acattgcctttccttccaaaattatttgatcagccagtataaaattatggggctgctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acattgcctttccttccaaaattatttgatcagccagtataaaattatggggctgctcag 590
Query: 121 cactgatagataaatatattaaattatttttcagagtgtttaagttggtgttatacactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cactgatagataaatatattaaattatttttcagagtgtttaagttggtgttatacactc 530
Query: 181 attcataccttcttagtgatagctgtgtctcacatattttatgtatatatttctgaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attcataccttcttagtgatagctgtgtctcacatattttatgtatatatttctgaagtg 470
Query: 241 cccatccatggataggttcacaaaataaaaagaaagaggtcagacgttcctcctactcaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cccatccatggagaggttcacaaaataaaaagaaagaggtcagacgttcctcctactcaa 410
Query: 301 aaattagttcaaaatctggggctgttttctaattctgcatttacctttacttggttaa 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 409 aaattagttcaaaatctggggctgtcttctaattctgcatttacctttacttggttaa 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_e04.g1 MSMg01no419_e04.g1 CHROMAT_FILE:
MSMg01no419_e04.g1 PHD_FILE: MSMg01no419_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:43 2005
(558 letters)
>mm_chr3_77774514_77775467
Length = 954
Score = 623 bits (322), Expect = 0.0
Identities = 363/378 (96%), Gaps = 4/378 (1%)
Strand = Plus / Plus
Query: 181 cagcccactataccagtaaccaagatttgtattttccaaatgcagagcatccaaattaaa 240
|||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 381 cagcccactatatcagtaaccaagatttgtattttccaaatactgagcctccaaattaaa 440
Query: 241 tacttgctttatgggaaaagaaacccagaatgttgacagctgtcaccatctgctctttaa 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttgctttatgggaaaagaaactcagaatgttgacagctgtcaccatctgctctttaa 500
Query: 301 taatccaagttcctcaacttcaatgtaagaaaaagataatcagtataaaatttagtaaaa 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 taatccaaattcctcaacttcaatgtaagaaaaagataatcagtataaaatttag-aaaa 559
Query: 361 tttacaaaatttaagaagctgtactgtggacagctatagagtatgttacagacagacttt 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ---acaaaatttaagaagctgcactgtggacagctatagagtatgttacagacagacttt 616
Query: 421 aaagggtcatatcccccaaggtgcttggaggacttaaaggagaccaaagcagtgaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaagggtcatatcccccaaggtgcttggaggacttaaaggagaccaaagcagtgaataaa 676
Query: 481 agatatcaagaatagcatgttatgcagcaagaaataaggcaccacttatgcaagttttgc 540
||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct: 677 agatatcaagaatagtatgatatgcagcaaaaaataaggcaccacttatgaaagttttgc 736
Query: 541 aggcataaaatcttaatg 558
||||||||||||||||||
Sbjct: 737 aggcataaaatcttaatg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 954
Length adjustment: 10
Effective length of query: 548
Effective length of database: 944
Effective search space: 517312
Effective search space used: 517312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
