BAC Information

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BAC

Clone NameMSMg01-419F01
Chromosome3 (Build37)
Map Location 43,927,122 - 44,059,746
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677788, LOC100039264
Downstream geneLOC676484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419F01.T7 (MSMg01no419_f01.b1)MSMg01-419F01.TJ (MSMg01no419_f01.g1)
ACCAG514446AG514447
length768744
length of high quality
(start - end)		396 (86 - 481)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no419_f01.b1 PHD_FILE: MSMg01no419_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:48 2005CHROMAT_FILE: MSMg01no419_f01.g1 PHD_FILE: MSMg01no419_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,927,122 - 43,927,517)(44,059,409 - 44,059,746)
sequence
NCCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCGCGGAATTCATCTATTCCAGGAAATTTCATTCAGGTGGCATTTCTCA
TGGTGATATTTTGATAGATAGAACAGACCATTAAGTCTAAGAAATACATG
CACACATTCTAAAAAAGGGTATGTTAATTTATTATAATCTTTACATTTAA
ACTGGGAGTATCAGTTTTAAAAGACCACTTCATTTTTTTTCTTTTCCTCC
TTCTACTCCCTTCCATATACTCCTTCCCTGTCAAATTTGTGATCCCTTTT
TCTTTAACTGTTTATATAAATAAACATAGCCTGCTCAGTCTGTACAATTT
TAGTTGTAGGTACATGATTTTAGGGCTGACCATTTGACATCAAATAACCA
ATTGTGGCACTATGTCTTCTAGAAATGCCAGTGAAATGAAACACATGGCT
GCTTAAGCAAGACCTGAATGAGGCTAATGCCAATCGATGTGGTAACGGTG
AAGTATGTGATTTCATAGAGCCTTAAGCCTCAGCAAAGAACCACAGGCAG
TTAAGTTCTGTTTGAAGCTAAAGAATAAGCCAAAACCAAACCTTAACAAT
TTTTCCGTTGTAGACCAAACTAATTTAATTTTATTGAAACCTTGGAAAGC
ATATAAAATTTGGTTGACCTCACAAAAAAAAGGATCGTGAATTTAAAAAA
AAAATCTCCCACCGGGGCAAATTGGGATAATACCCCACACACCGGTTTTC
GACTGTGTTGAAAAAAAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCATCCAGATATGTGATACTCACTG
ACAGAAAGCTTAAGTAAGATTCTGATAATTTCAAAGGTCAGTATTAAATT
TTCTTCATTAAGTGTCATTGTATATTAAGTGTATTTTGTTCCTAGACATG
GGAAGGCAGAACGCCTAGCACTAGTGAGTTGCAAACACAAAGCAAACTAT
GTGGTCTATTTGTAATTTTTTTGCTTTGCTTTTATTTATTTTTTACTTTT
TATTTATTTTGCCTTATTGCTCATCTGAGTTTCTTGCATTTTTGCTTTTG
TAGGGTTTTTTTGTGTGTGTGTTTTGATGTGTTTCTTTATACTGTTTGTT
TCATTTTTTTTTCTCGANAAAGACACATAGGAATATTTGAGAGATGTGTG
GTTAAGGAGATCAGCATTATATAGGAGGATTTTGCTCCCTTTTTTCTCTT
TCTCCCTTATTTCCATTTTTTTATTTTTCCTCCTTTCCCTTTTCTTTTTC
CCTTCTCATCGTTCTTCTTTTTTACCCCTTCTTTCCCTCTTTTTGTCTCC
TCATTTCCTCTACTTTCTTTTCTTCCTCCTCTCTTACTCCTCTCTCTCTC
CTTTCCTTATCTCTTTTCCTCCCTTCTTTTTCCTCTTCTCCCTCTCTTTT
TTATTTTTTACCTTCTTTTTTTTCTTTTCTCTTTCCCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_f01.b1 MSMg01no419_f01.b1 CHROMAT_FILE:
MSMg01no419_f01.b1 PHD_FILE: MSMg01no419_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
         (396 letters)



>mm_chr3_43926922_43927717
          Length = 796

 Score =  750 bits (388), Expect = 0.0
 Identities = 394/396 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtggcatttctcatggtgatattttgatagatagaacagaccattaagtctaagaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtggcatttctcatggtgatattttgatagatagaacagaccattaagtctaagaaat 260

                                                                       
Query: 61  acatgcacacattctaaaaaagggtatgttaatttattataatctttacatttaaactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgcacacattctaaaaaagggtatgttaatttattataatctttacatttaaactgg 320

                                                                       
Query: 121 gagtatcagttttaaaagaccacttcattttttttcttttcctccttctactcccttcca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gagtatcagttttaaaagaccacttcattgtttttcttttcctccttctactcccttcca 380

                                                                       
Query: 181 tatactccttccctgtcaaatttgtgatccctttttctttaactgtttatataaataaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatactccttccctgtcaaatttgtgatccctttttctttaactgtttatataaataaac 440

                                                                       
Query: 241 atagcctgctcagtctgtacaattttagttgtaggtacatgattttagggctgaccattt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 atagcctgctcagtctgtacaattttagttgtaggtaaatgattttagggctgaccattt 500

                                                                       
Query: 301 gacatcaaataaccaattgtggcactatgtcttctagaaatgccagtgaaatgaaacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatcaaataaccaattgtggcactatgtcttctagaaatgccagtgaaatgaaacaca 560

                                               
Query: 361 tggctgcttaagcaagacctgaatgaggctaatgcc 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggctgcttaagcaagacctgaatgaggctaatgcc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no419_f01.g1 MSMg01no419_f01.g1 CHROMAT_FILE:
MSMg01no419_f01.g1 PHD_FILE: MSMg01no419_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
         (338 letters)



>mm_chr3_44059356_44060093
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatccagatatgtgatactcactgacagaaagcttaagtaagattctgataatttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctcatccagatatgtgatactcactgacagaaagcttaagtaagattctgataatttcaa 332

                                                                       
Query: 61  aggtcagtattaaattttcttcattaagtgtcattgtatattaagtgtattttgttccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggtcagtattaaattttcttcattaagtgtcattgtatattaagtgtattttgttccta 272

                                                                       
Query: 121 gacatgggaaggcagaacgcctagcactagtgagttgcaaacacaaagcaaactatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gacatgggaaggcagaacgcctagcactagtgagttgcaaacacaaagcaaactatgtgg 212

                                                                       
Query: 181 tctatttgtaatttttttgctttgcttttatttattttttactttttatttattttgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tctatttgtaatttttttgctttgcttttatttattttttactttttatttattttgcct 152

                                                                       
Query: 241 tattgctcatctgagtttcttgcatttttgcttttgtagggtttttttgtgtgtgtgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tattgctcatctgagtttcttgcatttttgcttttgtagggtttttttgtgtgtgtgttt 92

                                                 
Query: 301 tgatgtgtttctttatactgtttgtttcattttttttt 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tgatgtgtttctttatactgtttgtttcattttttttt 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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