TACGTCTCCCTCACTCTTGCTTTCGTTAACCCATTTTTTTTCAAAACAGG
ACTCGNGAATTTTTTTTTCCGCTTCCGAGCCCTATTTTTTTTTACTAAAG
TCATTTTCTTAAGCAGTCTAAGCGAACTATAAAGTGCTACAATTCGTCCA
CATTGTCAGATCACTTAGAGTTGTTATTCCACCTATGTGCATTGTAGGAT
CCATTACTTTATTCATTAAAAGCCTTTGCAAAATTTACATCGGAGCAAAC
GTTCTTAAGGTGCATGAGTGAAAACTATAGTAACAAACTGAGGATTTTGA
AAGTAAAAAGAGCGCATTATTAATAATTTATGGATAATAGGTATAAATCA
GGATTGCCACTGTGAATACAGTCCATAGGAGAGGGTCAAACTATGTTTTT
CCTGTTGTGTGAGTGGCCTATATATATGGAACCTAGAACTTCTCCCTTTC
TGAGCAAATGGTCTGTCCACCAGCCCATCCATTCCGAATCCTTTTCCGGC
GCCACACTTATTTTTACTGACATATGTACACAACAGGGATAAATCTTTTA
TTCTGACGTACACTCTTTGTTTACAATAAACTATGTTTGTCGCGACCCCC
TTTATTCCCACTTACCTCCTCCCACTTCTTTGCACCCCGCCCCCCGTATA
ACCCCTCAATTTTAACCCCTTTTACCCGTTTTTTTGTTTTTGAAATATCC
CCCACNCACAATATCGCCCTTTTATGTTTTTATTCTCCCN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTAGCTGAAGATGTTGTGAGAAGAT
CTAATGTTAAATTCTTTAGGGAAATATTTCCTATTAACACATCCCCAGAG
AGGCAGGATCTATGTGAAAATCTTCCTTTAAGTCAGCATTACCCAAACAT
GTTTGATCACAGAACACTTCAAGCACATATGCACAACAGACAACAATGAA
AAGGTCCAGAGGACTACACAGAATGTTTGATAATGTGATCTGAAAGGCCC
TCCTTGGAAAATATTTTGTAAACCAGTGACCAAAATCATTATGAAACTGC
ATACATTTGTCTTACACCCCTGATGGGACAGGAAATTCTTCCAGCATGTC
CCTGCTGCTCTGAGTTAACAGTTCTTTCAAATTTCATGGGGGGAGCCAAT
GAGCTTTAAGCTATTTCCACATGAAAAATAGCTCAAAACCTACTAAAAGA
AATAAGTTTCTTGATTCAAGTAGAGACTTTGGGATTAAAAAAAAATCTTC
CAAACATAAGGTCATCAGTTTGCTTTAAAAATTGATCATTGCATACTGAT
TGCAAGGAAATGTGTATGTATGGAAAACAGAGGCCAACAAGAGAGAGTAT
CCTCTCTCATGGCCTAATCGAATTGATTGTGAAATGAAATGCTATCTGAC
AGGTTTTCTGAATTTATTTTCCCTAAA

Query= MSMg01no419_g09.g1 MSMg01no419_g09.g1 CHROMAT_FILE:
MSMg01no419_g09.g1 PHD_FILE: MSMg01no419_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:55 2005
         (532 letters)



>mm_chr3_117807287_117808218
          Length = 932

 Score =  822 bits (425), Expect = 0.0
 Identities = 464/487 (95%), Gaps = 16/487 (3%)
 Strand = Plus / Minus

                                                                       
Query: 46  gggaaatatttcctattaacacatccccagagaggcaggatctatgtgaaaatcttcctt 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggaaatatttcctattaacacatccccagagaggcaggatctatgtgaaaatcttcctt 422

                                                                       
Query: 106 taagtcagcattacccaaacatgtttgatcacagaacacttcaagcacatatgcacaaca 165
           |||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||
Sbjct: 421 taagtcagcattacccaaacatgtttgatcacagaatacttcaagcacatacacacaaca 362

                                                                       
Query: 166 gacaacaatgaaaaggtccagaggactacacagaatgtttgataatgtgatctgaaaggc 225
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacaacaatgaaaaagtccagaggactacacagaatgtttgataatgtgatctgaaaggc 302

                                                                       
Query: 226 cctccttggaaaatattttgtaaaccagtgaccaaaatcattatgaaactgcatacattt 285
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
Sbjct: 301 cctccttggaaaatattttggaaaccagtgaccaaaatcattatgaaactgcata----- 247

                                                                       
Query: 286 gtcttacacccctgatgggacaggaaattcttccagcatgtccctgctgctctgagttaa 345
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 -----------ctgatgggacaggaaattcttccagcatgtccctgctgctctgagttaa 198

                                                                       
Query: 346 cagttctttcaaatttcatggggggagccaatgagctttaagctatttccacatgaaaaa 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cagttctttcaaatttcatggggggagccaatgagctttaagctatttccacatgaaaaa 138

                                                                       
Query: 406 tagctcaaaacctactaaaagaaataagtttcttgattcaagtagagactttgggattaa 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tagctcaaaacctactaaaagaaataagtttcttgattcaagtagagactttgggattaa 78

                                                                       
Query: 466 aaaaaaatcttccaaacataaggtcatcagtttgctttaaaaattgatcattgcatactg 525
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 77  aaaaaaatcttccaaacataagttcatcagtttgctttaaaaattgatcattgcatactg 18

                  
Query: 526 attgcaa 532
           |||||||
Sbjct: 17  attgcaa 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)