BAC Information

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BAC

Clone NameMSMg01-419I04
Chromosome3 (Build37)
Map Location 118,838,904 - 118,839,351
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419I04.T7 (MSMg01no419_i04.b1)MSMg01-419I04.TJ (MSMg01no419_i04.g1)
ACCAG514595AG514596
length744742
length of high quality
(start - end)
160 (334 - 493)448 (69 - 516)
definitionCHROMAT_FILE: MSMg01no419_i04.b1 PHD_FILE: MSMg01no419_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:05 2005CHROMAT_FILE: MSMg01no419_i04.g1 PHD_FILE: MSMg01no419_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAA
TCCGCGGAATTCTCAACAGTACACTCAATGAAAGCCAAGAAGAACTGAAA
TAAATAATGTTCAAAGTCCTTTGTCATCAGGGAAATGCAAATAAAAATGA
CCCTGAGATTCTACCTCATACCAATCAGATTTGCTAAGATTGAAAACTCA
ATTGACAGCACATGCTATCAAGGATATGGAGAAAAAGGAACACCCCTCTC
ATGCTGGTGTTATTGCAAACTGTACAACCACTCTGGAAATCCATCTGGCA
GTTTCTCAAAAAATTGTAAGTAGTTANATTTTAAGACCCAGCTATAGCAT
CTTGGATATATACCCAAAATATGCCCCATCATATCACAAGGACGTATGTT
CCACTATGTTCATACAGACTTATTTATAATAGCCAGAAACTGGAAACAAC
CCAGGTGTCCTCCAACAGAAGAATGGATACAGACCCTAGGTGGCTCCCAG
AGACTATTCCAACCAGGAGCATGCACGGGCAGGTAGAAGGCTTCTGGCAC
ATATATAGCAGAGGCTTGCCCGGCGTGGTCTCCATGGGAGAAGATGGACT
TAATCTTAGAAAGAATTGAAGCCCTAAGGAAAGAAGAAATCTGGGGTGTG
GCATCTTCCTTTTTTTTTGTTCGGCGCAAATACTATGCCTTGCACAATTT
GTTCCAAAAACGATTAATAAGGTTCCTCTGTTTGGTATCTCCAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCTATGAAAGCATTTCCCTGGATTTCACAT
GGTACCTAAAATCCCTTTATTCTCTGAATCCACAGACTCTACATTTGCAT
ATTAAGCAAACTGTATATATGATGGATGCCATGATAAAATTTAATTCTAC
CTTTGAGAGTCTAACTTGATCTTGCCTTGCCTTTAGGCAAACTAGTTTGA
CAGTAAGAGAAGGGATTCTGAATATAAAAGTCTTGAATATTTAAAATATA
AAAGGTTCATTTAATACTGTTCTAGTTTGAATACCAGCATGTATAAAGTG
CTAGGACGGGCTGTGGCTGAATGGCACAGTAGTGAGCAGGCATGCTACAT
ACATCAGTGATGTGCCCCAATATAAATGACCATTTGCACAAACACAAACA
ACTAACCACAAACCTCAGATTTGTATTCAAACATAAAAATACATGCTTAA
AAAATACACTTATGTCAATCATTCAGCCAGGCAATGTAGGTGAAGACAGC
CCTGGCTAGTGATCTTGAAGAGCTCTCAACCATGCTGAAGACTGAACACT
GAACCCAGTAAGACTTTTGACTTGACCTGATATTACACACCACCCTGATG
CTCCCTGTGTCATGTCCATAATGGTTGAATGAACCTTTAAATCGCATACC
TTTTATAATGGTGTAGTAAAAACTACTTCTTTATACTCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_i04.g1 MSMg01no419_i04.g1 CHROMAT_FILE:
MSMg01no419_i04.g1 PHD_FILE: MSMg01no419_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:05 2005
         (448 letters)



>mm_chr3_118838704_118839551
          Length = 848

 Score =  866 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctatgaaagcatttccctggatttcacatggtacctaaaatccctttattctctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctatgaaagcatttccctggatttcacatggtacctaaaatccctttattctctgaa 260

                                                                       
Query: 61  tccacagactctacatttgcatattaagcaaactgtatatatgatggatgccatgataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacagactctacatttgcatattaagcaaactgtatatatgatggatgccatgataaa 320

                                                                       
Query: 121 atttaattctacctttgagagtctaacttgatcttgccttgcctttaggcaaactagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaattctacctttgagagtctaacttgatcttgccttgcctttaggcaaactagttt 380

                                                                       
Query: 181 gacagtaagagaagggattctgaatataaaagtcttgaatatttaaaatataaaaggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagtaagagaagggattctgaatataaaagtcttgaatatttaaaatataaaaggttc 440

                                                                       
Query: 241 atttaatactgttctagtttgaataccagcatgtataaagtgctaggacgggctgtggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaatactgttctagtttgaataccagcatgtataaagtgctaggacgggctgtggct 500

                                                                       
Query: 301 gaatggcacagtagtgagcaggcatgctacatacatcagtgatgtgccccaatataaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatggcacagtagtgagcaggcatgctacatacatcagtgatgtgccccaatataaatg 560

                                                                       
Query: 361 accatttgcacaaacacaaacaactaaccacaaacctcagatttgtattcaaacataaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatttgcacaaacacaaacaactaaccacaaacctcagatttgtattcaaacataaaa 620

                                       
Query: 421 atacatgcttaaaaaatacacttatgtc 448
           ||||||||||||||||||||||||||||
Sbjct: 621 atacatgcttaaaaaatacacttatgtc 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)