BAC Information

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BAC

Clone NameMSMg01-419K09
Chromosome3 (Build37)
Map Location 32,327,059 - 32,327,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik
Downstream genePik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K09.T7 (MSMg01no419_k09.b1)MSMg01-419K09.TJ (MSMg01no419_k09.g1)
ACCAG514700AG514701
length732765
length of high quality
(start - end)
90 (361 - 450)199 (375 - 573)
definitionCHROMAT_FILE: MSMg01no419_k09.b1 PHD_FILE: MSMg01no419_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:15 2005CHROMAT_FILE: MSMg01no419_k09.g1 PHD_FILE: MSMg01no419_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTCATAAATTGTGGGGCGATACGACCTTATATCTCAGCACCGCGN
ANTCTCGCTTTTTCCCGAAAGTGAAAGAGCTGCGCACTTGTTGAGATCTC
TCCCTGTAAGCTGGGGAGAGACACTTTTTACTCCTCTATCCTGTGTGCCT
CTGGGGATACTGATAGAGCCTTTGGGCATATTTCCCGTGATATATAGTCC
CTTTAAGAATTGGTGCTTTCCGGAGGGTCTCCCATTTGCCTAGGTTGCCC
ACCCCGGCCTAACTCTCCGGTCTGAGCTTCCTGATAGCTGAGAGTACCTA
CCCCTGGACGTTTGTCCAGATGCGTGGAACCCCTCTTACTAGACTATTAG
TGTGACAAGCTCTTTAATCCTCCCTGTGATTGTAAACCAAACCACAAGTG
TTCTGATACCTTCCAAGGAAGTACACCCAGCTAGCTTCTCATCACATTCA
GCAAAATGAAACCTTTTACATGCTAATTTTACTTACGTAGCCGTTTTATA
AACACAAATATGTCTACTTCTTACATACAGTATGCACAAGTATACTCCGT
TTTATTTCTTTTAGGAAGTGACACAGTTTGCCCACCACTTTGTTATCCCC
ACAACACCTCTTTTCTTCTTTCCATCTCCCATGCTTGCTTCCCCGGTGAT
TTTCTAACCGGTTTCCATTTTATTGGTTTTTCCGTAAAACCCCCTGCCTG
TCATCCCCCCGGTTTCCTTTGTTTTTCTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACATTGTTAAAAGTCATGTACCTCTGACACTCGT
TGCATATCATGACGAGTAAGACAAAGCCACCTACCCTCACATATGACTTG
ACCTGTTCAGTATGTGACATCACCCAGGACAGCTCTGAACTGTCCTGAGA
ACACGATGTCGATTTCGCATCGAATTCGCATGAGCGAATACCAGTTAGCA
ATACTGGTTTTAAGTTGCTAGGTACATCATGAACTTAATAACACTACTAC
CATACGAACCATATCTTGAAATGAGTTGTAGAAGAATTTAATTTTATAGG
CCAGAAGTGTGGCTTAATGATAAGAGTACTTGTTTAGCATGCTTAAGGTT
CTGTTTTGATTCCCTACAAAACTGAAAATGCAAGGACAATAACAAAAGCA
AAATCAAATTTCAGTGTGCACTAAGGTGAGCTAACATTTCAACTCCAAAG
GAGACTAAGCATTTAGGCAGCTGGAGACAGAGCTGTGAGATGGTAGCACC
TGCCTAGCAGGTGCCTAGGCTGGATGCCAATACCCAAAGTAAAAGCATGG
AAGGAAGAACAGGCCAGGGAGGCTTATGAAATGCAATTATGAGGAGAGTG
CACAAAAGACCGGGTGACTTGATACTATCACGTGATTTTATTTACACAAT
GTTCTCCCTATAGAGTGACCTAGAGTTTCCTAGAGACTACTCCCCTCTTC
CCCCCTAGAACGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k09.g1 MSMg01no419_k09.g1 CHROMAT_FILE:
MSMg01no419_k09.g1 PHD_FILE: MSMg01no419_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:15 2005
         (199 letters)



>mm_chr3_32326859_32327457
          Length = 599

 Score =  385 bits (199), Expect = e-111
 Identities = 199/199 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacttgtttagcatgcttaaggttctgttttgattccctacaaaactgaaaatgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agtacttgtttagcatgcttaaggttctgttttgattccctacaaaactgaaaatgcaag 340

                                                                       
Query: 61  gacaataacaaaagcaaaatcaaatttcagtgtgcactaaggtgagctaacatttcaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gacaataacaaaagcaaaatcaaatttcagtgtgcactaaggtgagctaacatttcaact 280

                                                                       
Query: 121 ccaaaggagactaagcatttaggcagctggagacagagctgtgagatggtagcacctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccaaaggagactaagcatttaggcagctggagacagagctgtgagatggtagcacctgcc 220

                              
Query: 181 tagcaggtgcctaggctgg 199
           |||||||||||||||||||
Sbjct: 219 tagcaggtgcctaggctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)