BAC Information

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BAC

Clone NameMSMg01-419L01
Chromosome3 (Build37)
Map Location 88,659,523 - 88,659,936
singlet/doubletsinglet
Overlap gene5830417I10Rik
Upstream geneSh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419L01.T7 (MSMg01no419_l01.b1)MSMg01-419L01.TJ (MSMg01no419_l01.g1)
ACCAG514732AG514733
length7401,410
length of high quality
(start - end)		414 (77 - 490)---
definitionCHROMAT_FILE: MSMg01no419_l01.b1 PHD_FILE: MSMg01no419_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:18 2005CHROMAT_FILE: MSMg01no419_l01.g1 PHD_FILE: MSMg01no419_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATGTATTCTAGGCAAGCTCACACTGAGCTAAGAGTC
CCAGCCTACACAGAATTCTATCAAGAGGCAAACCCAGGCCACAGTCGTTC
ATGACTTCCTTCTCTGTGAATAACCTGGAACGAGATTCTACTTCCCAAGA
TAAAGAGAAACTCCAGAACACATACCACTCCTTTCTCCACTACTTCCTTC
AGTTTAGAGCGGGTCATCTTAGGCTCCTAAGAAGGGACATACAATTATGA
TGTCATTTTTCAAGTCTGAGATGTGTCTTGTTGTTTACAAATGCCTACAT
GGCCTCCCACACTTGGAAAGCCTGACACGAAGCTACTCACAAACAGCGGC
ATGTCTTCTGTCTCACTGATGGCTGCCTTCATCATAGCCACAACATGTTC
ATTTGTGATTACTTCCTGGGGGGGGAGAGAGGAAATCCCACGTTAGGCCA
AAGGCTTTGCCATCANGACTATAGTCAACTGTACATAACTCTGCAGCTAC
TATTGTTGGAGGATAATAAGTAGCTAGAATCTCAACAGGTTTCACCTGGG
GGCCAGTGAGGTAACTAAAGAAAAAGAAAAACCGCCGCTGGGGGTGGGGC
CCCCCTTTATTCTCCCCTCCGGGGGGGCAAAGCAGGCGATTTCTTAATTC
CCCGCCACCCCTTCCCTCAATTTTCCGCTTTCCCCCTTTC

AACCCACCAAGACCCTTATGACACTACCCCACCGTCCCCCCACCACACGA
AACCGATATGAACGCCGCACACGCACCCCCCCTTATGATGCATTCATCAA
CACCCCTTGACCTTTTGCAACCAAACCCAAACATCTTTCTGACACACCCT
TATCACCTCATCCCAATTCTTATATACTTATCACGTATAAGCTAGCATTC
AGCAAACCCCATCGACTGCGTCCAGCATATAATCTCGCGCCCTCAATATA
ACAGCGAGATGCTCGCGCCCTAGCTCGACCCACATTTATTATCCTCTAAC
CGATATAACAGAAACGAGTTCAGAANTCGCTTTTACTCCTCCGCCGCAAA
CAACATATATTACTTGTATATAACGAGAGCTACGCCTCTGCAGTCTAAAT
AGCACCTCCTGCATCTAACGACCAATCGTGCACGTATGTGACAAAGAACA
CTCTCGCACACATGTCATACCCCCGCATGCGTGCTCGACACAAAATAATA
ATATATCCATCTTCGTAGAGGACGCCAACATCCCTACCATGAGACCATTT
AATAGTACTCTACTCACNCCGCACCCACGCGAAGCATTACAACGCATCGT
ATATACGCACGTATATAACCCGCACCCACCCGAGTCACTACTTCATCACA
GTGTATTAGCAGCCACATTATATGTCGTCTCGCACTACTATCGTACAGCA
CGCCCAGTGTCTTTCATCTCTCACATTCTGTGCGGCATCGTCCTAGCGCG
TACGTATACTGCTTCTAAGACGACCTCCTCACGATCTCCTGCATACAACG
CGCGCACTCGATTTAATCTCTCCTCGCGGATGCACACAACGNTCATTATC
GATATCACTGAACTACTCCGATATAATGATCTACTGACTCCGCTAGCTCT
GTAATATNAGCGCGATGCTACGCAACTTATCTCCTNGACTCAACGCTATA
TATTCCTACTACATCTCTACACACACATAGCGCAACTACAAACACGTGCA
CATCANCTATGCCAATAGATATCAACACATCACGATTCACCTCTCATCGC
ACCAGTACCTCATATTCACTTTCAGCGCGCTGACTCGCTATATACAGCCG
CTCGCCACATATACAACCTACACTGATCACAGTCTCCACCACGCTGCGTC
ANATCATACAGCTCACCTANCATGCACGCGACGACGTATACCTGATATGA
CCTATAGATGTTGCTCTCTCGACNCAATCTCTGCGCGATCTCACATAGCC
TATCTAGTATGCTCGGCTTACGTCATACATCGACTGAAGAATACGTTNCA
GTACATCACATAATCTTTACGTACGCACAGCNGAGCCACGATAGCTGTAG
CTCTNGTTCATCTCATGTCCACTGNCGNTTAGCGCAGTCNACCTGTCTCT
CTCTCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_l01.b1 MSMg01no419_l01.b1 CHROMAT_FILE:
MSMg01no419_l01.b1 PHD_FILE: MSMg01no419_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:18 2005
         (414 letters)



>mm_chr3_88659323_88660136
          Length = 814

 Score =  777 bits (402), Expect = 0.0
 Identities = 411/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagctcacactgagctaagagtcccagcctacacagaattctatcaagaggcaaaccca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caagatcacactgagctaagagtcccagcctacacagaattctatcaagaggcaaaccca 555

                                                                       
Query: 61  ggccacagtcgttcatgacttccttctctgtgaataacctggaacgagattctacttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggccacagtcgttcatgacttccttctctgtgaataacctggaacgagattctacttccc 495

                                                                       
Query: 121 aagataaagagaaactccagaacacataccactcctttctccactacttccttcagttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagataaagagaaactccagaacacataccactcctttctccactacttccttcagttta 435

                                                                       
Query: 181 gagcgggtcatcttaggctcctaagaagggacatacaattatgatgtcatttttcaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagcgggtcatcttaggctcctaagaagggacatacaattatgatgtcatttttcaagtc 375

                                                                       
Query: 241 tgagatgtgtcttgttgtttacaaatgcctacatggcctcccacacttggaaagcctgac 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgagatgtgtcaagttgtttacaaatgcctacatggcctcccacacttggaaagcctgac 315

                                                                       
Query: 301 acgaagctactcacaaacagcggcatgtcttctgtctcactgatggctgccttcatcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acgaagctactcacaaacagcggcatgtcttctgtctcactgatggctgccttcatcata 255

                                                                 
Query: 361 gccacaacatgttcatttgtgattacttcctggggggggagagaggaaatccca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gccacaacatgttcatttgtgattacttcctggggggggagagaggaaatccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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