BAC Information

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BAC

Clone NameMSMg01-419L15
Chromosome3 (Build37)
Map Location 66,096,128 - 66,096,293
singlet/doubletsinglet
Overlap geneVeph1
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419L15.T7 (MSMg01no419_l15.b1)MSMg01-419L15.TJ (MSMg01no419_l15.g1)
ACCAG514760AG514761
length775771
length of high quality
(start - end)
159 (161 - 319)244 (66 - 309)
definitionCHROMAT_FILE: MSMg01no419_l15.b1 PHD_FILE: MSMg01no419_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:21 2005CHROMAT_FILE: MSMg01no419_l15.g1 PHD_FILE: MSMg01no419_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCTTAAATTGCGGCCGCCTAAAGANNNCCATATCTACCAAGACCG
CGGAAANCNTCCCGCTCACCCAAAGGGAGGATGGNTGCGGGGGNCACTGA
ACTGCACTGGGGCTCGCTGGCCCCTCCAGCCTGGGCTTGGGCTTGAAGCT
TTCCACCAGAGGCAGCAATTGAGCCTTGGAGGAGTAGCTCGCAGGTAAAA
TGAGTTTGTGGGGACAGCCCTGCGATGGGCGGCTGCACGCAGAATCATAA
CTCTTTAGTCACTCCTGGGTGTTTTTTTTTTTTTTTTGGAAAGTTAACTT
GCCAACTAGTAACTCCTTATTTTTTTTCTAACAAATTTAAAACTAAGAGA
GAGTAGGCCTCAAGTTAGGTTTACATACACATCGAGGGGAACAAATTATG
AGAGAAATTGAGTAACCTCAGGTATGTCATTAATGAGTGAGTGGGTCCTG
TTCTATATCTGCCTGTAATGTTAAAGGGCATACTGTGAAGTTTCTTATCA
AGAGCTTATTGCACAGATAGGAATTGATTATGCCCAAGTATGGCTTCCTG
GTGGGCCCCCAAGTGTTTCCCACCCACGCTGGGCTGTCCCAAATTCTGGT
CTCCGTTATTCCCTCTCCTCTCCAGGCCCCATTTTCCATTTCCGCATTTC
CGCCCTGCCCCGCCCCTTTTTTTCTTTCCCTCTTATTTCACCTCCCCTGA
CCCCCCACCTTTTTTTTTTTTCTTTTTCCCCCGCTTTCTCTCTCTCTCGC
TTTCTTCTCCCTTTTCCCCCTTTCG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGTGT
TGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTT
TTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTA
TATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCTATTATG
GATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTGA
GGATTTTTGCATCGATANNTATAAGAGAAATTGGNCTGAAGNTCTCTATC
TTTGTTGTCTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATA
AAACGACCCCCTCATAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGT
GCTCAACTGGAACTACATCTTCTTTGAAGGCCTGATATATTTCTGCATTA
TACCCCTCTGGCCTTGTTTCTTTTTTCGTCCTCGTAAACATTTATTTTTT
GCTTCTTTTTTTTTGCTCCTCTGGTCTCTCTTGTTCTTCCCCCCTTTCTA
TCCCCCCCTCCTTCCCCTCTTTTTTACCCTTTCTTTCTCCCAAACAACAT
CTTTTTCTTTTTTTCTCCTATACCCTTCAATCCATTACTTCTATCTCTCT
TTTTTTTTCTCTTTTCCCTGATCCTTTTATATTACTCCCTCCCTTTTCCT
TTTTTTTTTTTCTTCTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_l15.b1 MSMg01no419_l15.b1 CHROMAT_FILE:
MSMg01no419_l15.b1 PHD_FILE: MSMg01no419_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:21 2005
         (159 letters)



>mm_chr3_66095967_66096525
          Length = 559

 Score =  282 bits (146), Expect = 5e-81
 Identities = 158/166 (95%), Gaps = 7/166 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcagcaattgagccttggaggagtagctcgcaggtaaaatgagtttgtggggacagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggcagcaattgagccttggaggagtagctcgcaggtaaaatgagtttgtggggacagccc 268

                                                                       
Query: 61  tgcgatgggcggctgcacgcagaatcataactctttagtcactcctgggtgttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgcgatgggcggctgcacgcagaatcataactctttagtcactcctgggtgttttttttt 208

                                                         
Query: 121 tt-------tttttggaaagttaacttgccaactagtaactcctta 159
           ||       ||||| |||||||||||||||||||||||||||||||
Sbjct: 207 ttttttttcttttttgaaagttaacttgccaactagtaactcctta 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)