BAC Information

Click to search

BAC

Clone NameMSMg01-420B19
Chromosome3 (Build37)
Map Location 143,450,631 - 143,450,888
singlet/doubletsinglet
Overlap genenone
Upstream genePkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B19.T7 (MSMg01no420_b19.b1)MSMg01-420B19.TJ (MSMg01no420_b19.g1)
ACCAG515054AG515055
length725786
length of high quality
(start - end)
259 (251 - 509)455 (66 - 520)
definitionCHROMAT_FILE: MSMg01no420_b19.b1 PHD_FILE: MSMg01no420_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:50 2005CHROMAT_FILE: MSMg01no420_b19.g1 PHD_FILE: MSMg01no420_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTACAGA
ACGCGGAAATCANCTGTTTTTCCCACACAGATAGGTCACAGGGTAAAAGA
ACTGGGTGCTCTTTCAGAAATCCTGAGATCAATTCCCACACCCCACATGT
GGACTTTATAATCATCTATAAAGAGTTCTGGTGCCCTCTTCTGGCATACC
AGTATGCATGCCGAAAAAGTAATCCTATATATTAAATAAATAAATCTTTT
AAAAATGAATTCTGCCAGAATTAAGGTATCTGTAACATTCTTACCAAATT
GCCTGGGACACACCGCTCAACGTCTGATAGCTGGTTCTTCGGTTGTTTTG
TTAGCTAATAGTAATATTGGCTCCAACAGGATCAGTTCCCTGTCTTGTAA
ACTTACTGAACCCCAAATAGTCTCAGATCACTGAGCTGGTTTTAGAACTG
AAGTTTAGTCCACCTTTCATTTGACGAGAGTCCCCATCCTATACATGAAA
AGCACAGTTGTCAACCCTGATTCCATGCCACCAGGCCTTCCTCAGCTGAA
CACTCTGAGTCCAGCTGAGTCCATCATCAGAGAGGCTTTACCGTGTACGA
ACCTAAATGTGCNACTGAAAGTGCCCGTTGGTGGCTGTCCTTGCCCCTTA
TGAAGACTTTGGCCCCCAAAGGACACAACTTTAAACAGCTGTCCCCCAAT
TTAAAGCCCCGCCCCCTAAAGGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTACCAGCAACACACAGCTAGTACACCGTGCAAA
GAATCAGAAGGGACAACAGAAATGAAGGAACAAACACCCGACAAAGACAA
GACCAGATATGAGCACTTAAAATTACAATCTTCCTAAATCCAGATGCCTT
GTTGCTAGTGTAAAAACACAATGACAGCCGGAATAATATGTCTCTATTAG
AGCCCAGCAACTCTACCACAGTAGGCCCCGGGTATTGCAACATAGCTGAA
GCATAAGACAGACACCTCGGAATGGCATTTATGAATATGATAGAGGTCCT
TAAAGAGGAAATGAATAAATCTCCTAAAGAAATCTATGAAAACACAAACA
TTAGAAGGAAATAAATAAGAGTTCAAGACCCAAAAGTGGAAATAGAATGA
ATAAAGAGAAGAAAACGGGTAAGCAAATGAACCCTTGAAGCAGGAAGTGT
GCCCCCATTTTTCCCCTTTAGCCTGACAGAGCATTTGGACCTGCTCCTGA
CGTGGTGTTCACCCACGTCCAAAATGCTTAAAAGACGTCGCTTCCCAGTC
TAGAAGCACACGCGGNCAGGATTTGTGGTTTCTTTTCCACCATCCTCAGG
CAGGCTGGTCTCTAATAAAATCACCCTTTTCTTCCTCCTTCTCAAAAGGG
GCCATGCCCCCAGGCTTCTGGGCTTTTGGTCTTTGGCCCCTTCTTTAAGA
AAAGGTCTTTGGAGATTTTTTCTCTCCCGCCCAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b19.b1 MSMg01no420_b19.b1 CHROMAT_FILE:
MSMg01no420_b19.b1 PHD_FILE: MSMg01no420_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:50 2005
         (259 letters)



>mm_chr3_143450431_143451089
          Length = 659

 Score =  476 bits (246), Expect = e-139
 Identities = 255/258 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatgaattctgccagaattaaggtatctgtaacattcttaccaaattgcctgggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaatgaattctgccagaattaaggtatctgtaacattcttaccaaattgcctgggaca 260

                                                                       
Query: 61  caccgctcaacgtctgatagctggttcttcggttgttttgttagctaatagtaatattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccgctcaacgtctgatagctggttcttcggttgttttgttagctaatagtaatattgg 320

                                                                       
Query: 121 ctccaacaggatcagttccctgtcttgtaaacttactgaaccccaaatagtctcagatca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctccaacaggatcagttccctgtcttgtaaacttactgaaccccaaatagtctcaggtca 380

                                                                       
Query: 181 ctgagctggttttagaactgaagtttagtccacctttcatttgacgagagtccccatcct 240
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ctgagctgtttttagaactgaagtttagtctacctttcatttgacgagagtccccatcct 440

                             
Query: 241 atacatgaaaagcacagt 258
           ||||||||||||||||||
Sbjct: 441 atacatgaaaagcacagt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)