BAC Information

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BAC

Clone NameMSMg01-420F17
Chromosome3 (Build37)
Map Location 25,560,076 - 25,560,230
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420F17.T7 (MSMg01no420_f17.b1)MSMg01-420F17.TJ (MSMg01no420_f17.g1)
ACCAG515241AG515242
length721761
length of high quality
(start - end)
157 (368 - 524)472 (62 - 533)
definitionCHROMAT_FILE: MSMg01no420_f17.b1 PHD_FILE: MSMg01no420_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:10 2005CHROMAT_FILE: MSMg01no420_f17.g1 PHD_FILE: MSMg01no420_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACAACAATACTTGCGCGANNAGAGANCACTTTTCGAGGGAGCGNGNNAN
NNCNTTTTTCAAAACGACGTGNNNACGACGNCGGGGGNGCAGAGGAGGGA
TACNTAATTACCACCCAGATGTTAATATCAACTAATACCACCACGACGTG
AAAGGACAGGTGAGTGCTGCTTAAAAGTGATCCTTTTTATGAAAGTGGGC
ACACAGGCTCCTGTACGGAGGATGATTGTTGTAATGCATACTGTTATGGC
ACCAGGTAATAAGAGAACCTCAATTGTGGTGTCAGAGGGTTTTCTAGAGG
ATGTGTTGCTTGNTTTTGACTCTCAACATCTAGACGGAACCGAGCAGGAG
AAACAGCCAGTATGGTAGAGAAGCCACAGAAGGAATGGCAGAGCCTCTGC
TTGGGTTGAAACTGAGCATTTTCGGACAGCATTGTTTGGAAGTGTGAACC
TCTAGCATGTAACCAAATTATCTTTAAGAGTAAGCTCACACACAAGAAAG
GTTTAGAACCTTTTTTTTTGGCAATGTCACATAGCTGTTACATGGATCCA
TCAGTGATTTTCAAGGCCTTCGAATATGGTCTAGACCAGCTCTCACTCTG
TAAGGAGGCATGAGCAGCAGCCCGCGAATGGATGTGTATCTCGTGGAGCC
ACAACGAAAAATGTAAGCAAAAGCAACTAGCCCCCCATAGCAGGTTTAGG
AAAGCTGAGCCTTTGGTGGAN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGGTCTTTTGCAACAGAAGCAAGCAACTGTTGAACCAAC
TCTTTAACTCTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCT
CTTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCCCC
TCCTTCTTCTTCTTTTTCTTCTTCTTATCATTATTATTATTATTTAATCT
TTTTATTACAGTCCTATCATTATCCCCCTCTCAGTGTGCTCTCTGACAGT
TCCTCATCCCATTCCTCCTCCCCTGTCTCCAAGAGGATGTCCCTACCCCA
CACCCAGACCACCAGACCTCCACCCTCCCTAGGGCCTTAAGTCTCTCAAG
GGTTGGGTTCTTCTTCTCTCACTGAGGCCAGACTAAGCAGTCCTCTGCTG
TATATGTGTTAGGGGGCCTTGTGCCAGCTACTGTATGTTGCCTGGGTGGT
GGCTCTGTGTCAGAGATTCCGGGGACCANGTTAGTTGAGACTGCTGGTCT
TCCTATAAGGTCACCCTCCTCAGCTTCTTCAGCATTCCCCTAATTCAACA
CTGGGGGCCTCAATTTAAGAAAACATCTGGGTCTCTCAGCTGGTTGTGGG
GGCCCCTGGAAGGAGGCCTGTTAGAATCCGTCCTGTAAAAAACCATAATT
TTTTATATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_f17.b1 MSMg01no420_f17.b1 CHROMAT_FILE:
MSMg01no420_f17.b1 PHD_FILE: MSMg01no420_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:10 2005
         (157 letters)



>mm_chr3_25559876_25560432
          Length = 557

 Score =  277 bits (143), Expect = 3e-79
 Identities = 153/157 (97%), Gaps = 2/157 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaagccacagaaggaatggcagagcctctgcttgggttgaaactgagcattttcggac 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaagccacagatggaatggcagagcctctgcttgggttgaaactgagcattttcggac 260

                                                                       
Query: 61  agcattgtttggaagtgtgaacctctagcatgtaaccaaattatctttaagagtaagctc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 agcattgtttggaagtgtgaacctctatcatgtaaccaaattatctttaagagtaagctc 320

                                                
Query: 121 acacacaagaaaggtttagaacctttttttttggcaa 157
           ||||||||||||||||||||||||||||||  |||||
Sbjct: 321 acacacaagaaaggtttagaaccttttttt--ggcaa 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)