NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTTTATTTCATCCTGCATGTGACTTTCTGGCCTTCATCTCTCA
TACCCTTTTGAAAGTATTTCAAGACTGAGTTGATTACAAACGTGAGTCAG
TTCTGTCTCTGCTGTTTCTGAGGTGGTTGGGTAAGCTCTCCTAGTCTGCT
GTGTCCACAGCAGTCCTTGCTCTGTGTACACACAGAGAAAAATGTATATA
AATATATAAGTTGCATAAATGTAAGTAAAGAGAGACATTATTTAATTTTT
AGCATTTAAGGAACTTATTCTACTGTATCACTGCCTTACTACCTAACTTT
ATGTTATCAATAGTATAGTAATACATAAATAGCATAGTAATGATATTCTA
GTTCATATATATATATATATATATGTATATATATNATATATGTTGGTTTC
AATACATCTTTAAATTATGGGGAACTTTTGGGATAGCATTTGAAATGTAA
ATGAAGAAAATACCTAATTAAAAAAATTATTCAGGGTAAATGTACCTTTA
GCATATGGTAGCCATGAGAAGGCCAATATGTATGATACATGTAGTATGAT
GGTTTGAATAATACTAGCTGCCCCAGAGGATTATATATTTGAGTGTTTAG
ACATTAAGGATTGGCGCTTCTTAAAAAGTTTAAGAGGTGTGGTCTTATTG
TGTGACGTATTGTTGTGTTGTAGGTAGTGTGTCTCTGTAGAGTAAGTTTT
TATGATTCGAN

CGANTNNTCTATGAAGTCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCGACAAAGGGAGTTGAAAATCTCAACAAAGT
CTCTTCATTTAATAGCTATATCTATTACACTTCTCATCAATGTTGCATTT
TGTCAACAGCTACTACGTAGCTGCAAAGATCCAGGGTGGGACTGGAAATA
GGAAGGGTAAGGCCGAAAAGTTATCCCATGATCTCTTAAACTAATAAGTG
GTAGAATTAATGCNTTTATATAAGGTATTAAAAGAAAAAAAATAATAGAA
CCACCGTTTTATTTGCCAGCATGCTTTGTGGTCCAAGGTTTTGGAAATAA
CAAAAAAAAAAAAGGTTTGGCACCTTGGAATTCCTTGGGGTTTAACAACT
AAAAATTTATTTCTTCCACCGGAGAAAGGCAATTTGGAAGGAAGCCCACT
GTGTAAAAAAATCCCACCCCCGGGGTTTGGGGTGGAATATCACAACCGGA
GAGGGGGCTAAAAAAAAAGAGACCCCCCAACACCCCAAAGAACCCCCCCC
GCGCCCTTTTGGNCCTCTTTTGAGAGGGGGGGAAAAAAATTTCTGTGGGG
AGTGTTATTAAATAATATAAGGGCCGGCAGAAAAATATGCCCCCCCAAAT
TTTTTGGGGGAAAAAAAAAAGAATGTTTTGTTTTGCCACCGGGGGGGGTG
CTGCCTACAAAAAAATAAAGAAAATACCC

Query= MSMg01no421_a13.b1 MSMg01no421_a13.b1 CHROMAT_FILE:
MSMg01no421_a13.b1 PHD_FILE: MSMg01no421_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:03 2005
         (586 letters)



>mm_chr3_49974912_49975898
          Length = 987

 Score = 1038 bits (537), Expect = 0.0
 Identities = 556/565 (98%), Gaps = 8/565 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcttt---atttcatcctgcatgtgactttctggccttcatctctcataccc 60
           |||||||||||||   |  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaattcttctttaaca--tgatcctgcatgtgactttctggccttcatctctcataccc 503

                                                                       
Query: 61  ttttgaaagtatttcaagactgagttgattacaaacgtgagtcagttctgtctctgctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttttgaaagtatttcaagactgagttgattacaaacgtgagtcagttctgtctctgctgt 443

                                                                       
Query: 121 ttctgaggtggttgggtaagctctcctagtctgctgtgtccacagcagtccttgctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctgaggtggttgggtaagctctcctagtctgctgtgtccacagcagtccttgctctgt 383

                                                                       
Query: 181 gtacacacagagaaaaatgtatataaatatataagttgcataaatgtaagtaaagagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtacacacagagaaaaatgtatataaatatataagttgcataaatgtaagtaaagagaga 323

                                                                       
Query: 241 cattatttaatttttagcatttaaggaacttattctactgtatcactgccttactaccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cattatttaatttttagcatttaaggaacttattctactgtatcactgccttactaccta 263

                                                                       
Query: 301 actttatgttatcaatagtatagtaatacataaatagcatagtaatgatattctagttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actttatgttatcaatagtatagtaatacataaatagcatagtaatgatattctagttca 203

                                                                       
Query: 361 tatatatatatatatatatgtatatatatnatatatgttggtttcaatacatctttaaat 420
           |||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 202 tatatatatatatatat--gtatatatat-atatatgttggtttcaatacatctttaaat 146

                                                                       
Query: 421 tatggggaacttttgggatagcatttgaaatgtaaatgaagaaaatacctaattaaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tatggggaacttttgggatagcatttgaaatgtaaatgaagaaaatacctaattaaaaaa 86

                                                                       
Query: 481 attattcagggtaaatgtacctttagcatatggtagccatgagaaggccaatatgtatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  attattcagggtaaatgtacctttagcatatggtagccatgagaaggccaatatgtatga 26

                                    
Query: 541 tacatgtagtatgatggtttgaata 565
           |||||||||||||||||||||||||
Sbjct: 25  tacatgtagtatgatggtttgaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space:   562752
Effective search space used:   562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)