NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCG
CGGAATTCTGTGTATATGTCCCCATTCAACAAACTTTAGCATTAAAACTT
AAGGATTAAAATGACGTCATTCTGTTATAAAAGCACTAACAGTTGTACAG
TAATTATGAAGGAACGAAATCAATAGCACAAATGTGAATATATCACTTTA
CTCTATAACTACTAATGGTTTTAGATATTTAAACTTGTAATATATTTCAC
TGTGTTATTCGATACTTGGATAGAGATTTTCGTCAATGCAAAGCAGAAAA
CAATGCAATGTACTCTGTTATTAACATATGCTTCAGAATACTCATGGAAA
GAAATATCTTAAGAAGCAATTTCAATTTTCTTTATCCATTTCATGTAATC
AGTAGGAACATTTACCTTTAAAGAATACATCCCTACAAAACACACATACA
TGTGCACACACAAATGCAACATTTTTAAAACTTAAAAATTTTAAATGTAC
TCTTAAAGTCAGAGTGCAAGCTATTTTTGTTTTTTTTTGTTTGGTTTGTT
TTGCTATGCTTTGCTTTCTAAATACACATAAGCTAGGGTCATCTGAGGAA
AGGGAACTTCAACCGAGAAAATGACCTGTANGCAGATCTGTGGCTCATTT
TCCAGATAATATTTGATGTGTTGAGGCCTAGTCCACAGTAATTGGTGTCA
CCCCTGGGTAGCTGGGCATGAACCGAAAAAAAAACAGGGGGACCAGCCAT
TTGGAGAAAGCCAAA

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGTCCTG
GGCTTTTTTTAGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGT
GATATGGGACTGTTTAGATGATCAACTTGATCCTGATTCAACTTTGGTAC
CTGGTATCTGTCCAGAAATTTGTCCATTTCATCCAGGTTTTCCAGTTTTG
TTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCA
GGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGGAT
TTTGTCCCTGTGCCCTTTAGTGAGTCTAGCTAAGGGTTTATCTATCTTGT
TGATTTTCTCAAAGAACCAACTCCTCGTTTGGTTAATTCTTTGAATAGTT
CTTCTTGTTTCCACTTGGTTGATTTCACCCCTGAGTTTGATTATTTCCTG
CCGTCTACTCCTCTTGGGTGAATTTGCTTCCTTTTTTTTCTAGGGCTTAT
AGATGTGTTGTCAAGCTGCTAGTATGTGCTGTCCCCCGTTTCTTCTTGGA
AGCCCTCATAACTATGAGTTTCCCTCTTAAAAAAGCTTTCCTTGTGCCCA
CTAGTTTTGGTAAATTTTGGGCTTCTTTTTCTTTAAACCCCAAAAAGGCT
TTAAATTCTTTTCTTTTTCCTTTTCTTGGCCAAGGTTTTATTTGTAAAAA
AGTGTTTTTTTTTTTCTCCCGGAGG

Query= MSMg01no421_d21.b1 MSMg01no421_d21.b1 CHROMAT_FILE:
MSMg01no421_d21.b1 PHD_FILE: MSMg01no421_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:21 2005
         (550 letters)



>mm_chr3_75836709_75837658
          Length = 950

 Score =  996 bits (515), Expect = 0.0
 Identities = 543/553 (98%), Gaps = 3/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaactttagcattaaaacttaaggattaaaatgacgtcattctgttataaaagcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acaaactttagcattaaaacttaaggattaaaatgacgtcattctgttataaaagcacta 587

                                                                       
Query: 61  acagttgtacagtaattatgaaggaacgaaatcaatagcacaaatgtgaatatatcactt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 586 acagttgtacagtaattatgaaggaatgaaatcaatagcacaaatgtgaatatatcactt 527

                                                                       
Query: 121 tactctataactactaatggttttagatatttaaacttgtaatatatttcactgtgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tactctataactactaatggttttagatatttaaacttgtaatatatttcactgtgttat 467

                                                                       
Query: 181 tcgatacttggatagagattttcgtcaatgcaaagcagaaaacaatgcaatgtactctgt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcgatacttggatagagattttcttcaatgcaaagcagaaaacaatgcaatgtactctgt 407

                                                                       
Query: 241 tattaacatatgcttcagaatactcatggaaagaaatatcttaagaagcaatttcaattt 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tattaacatatgcaacagaatactcatggaaagaaatatcttaagaagcaatttcaattt 347

                                                                       
Query: 301 tctttatccatttcatgtaatcagtaggaacatttacctttaaagaatacatccctacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctttatccatttcatgtaatcagtaggaacatttacctttaaagaatacatccctacaa 287

                                                                       
Query: 361 aacacacatacatgtgcacacacaaatgcaacatttttaaaacttaaaaattttaaatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aacacacatacatgtgcacacacaaatgcaacatttttaaaacttaaaaattttaaatgt 227

                                                                       
Query: 421 actcttaaagtcagagtgcaagctattttt-gttt--ttttttgtttggtttgttttgct 477
           |||||||||||||||||| ||||||||||| ||||  ||||||||||| |||||||||||
Sbjct: 226 actcttaaagtcagagtgaaagctattttttgtttgtttttttgtttgttttgttttgct 167

                                                                       
Query: 478 atgctttgctttctaaatacacataagctagggtcatctgaggaaagggaacttcaaccg 537
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 166 atgctttgctttctaaatacacataagctagtgtcatctgaggaaagggaacttcaaccg 107

                        
Query: 538 agaaaatgacctg 550
           |||||||||||||
Sbjct: 106 agaaaatgacctg 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)