BAC Information

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BAC

Clone NameMSMg01-421G05
Chromosome3 (Build37)
Map Location 147,445,591 - 147,445,838
singlet/doubletsinglet
Overlap genenone
Upstream genePrkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421G05.T7 (MSMg01no421_g05.b1)MSMg01-421G05.TJ (MSMg01no421_g05.g1)
ACCAG516027AG516028
length801904
length of high quality
(start - end)
249 (74 - 322)132 (74 - 205)
definitionCHROMAT_FILE: MSMg01no421_g05.b1 PHD_FILE: MSMg01no421_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:32 2005CHROMAT_FILE: MSMg01no421_g05.g1 PHD_FILE: MSMg01no421_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATGCGCGGAA
TTCTGTCTAGATCTCATACAAGTCCCTAGAAGAGTCAGCCACTTGGACAA
TGGTAGATAATTACAGATTAAATAAAAGATCACATAGAAGGAATATACAC
AAATACAAAACCAACTTAAAAGAAATGAGAGAACTACATGTGAAATGTTT
TAAGACAATAAAAGAAAGCTCTGGGATATTTACTGTTTGAGTAACACTAT
TATGTTATAAACAGAACATTCAGGAAATAATAAACAAAGAAATAATAGGA
TACAGTTCACAACACTGAGGATTACTCGATTTTTGGATGAACCATGGAGT
TCCATGGACACTTATCAATGTACACCCATTCATTTTAGTTTAAATTTGTA
AACTTTAAACATATCATCCACTGAAAATTAAAGAAATAAAAAATAATTAC
ACAGGACAAAAAAATATAGGCTCCTAATTCCAAACCTGACACAAGGTAGA
ACCGTGTTATGTTGTACTAAAATTTTCACAATATTAAGATCACATATCTT
ACATGTTTCTGTGGATACCGCTCATATGTTTCTGTGGATACCATCAAACC
GTCTCTTCAGCCACAATACATTATACATATCTGTTAATAACATCGTTGAC
AGTTACCCATCCCCCACATCCATTGTTCGCCTTACCCTGGCTTGCCTATC
CGCTACCTCCTTTTTGCTGATACTTTACTTGCCCTCCCCCCCGCTCATTT
TCTTGTTCCCTTGTTCCCGCTCCATACGGCACTCCCTGTATCCATTCCCC
G
ATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTGAATCAGTATGCCCCAAAGCCAA
AGGAGAGGGCATTATTCTGTCTTCTTTTGTCTCTGTACAAATGTTCACAT
ATGCGTGTATGTGTGCGTATATGTATATGTATATGTATATGTATAGGTAT
AGGTATAGGTATAGGCGCTCCCCTTCGCTTCCTTTTTCCGTCTCTTCGTC
TTCTTCCCGTTCTTTCTCGTATTTTCTCCTTTCTCATTTTTTTTTATTTT
TTTTTTTTTTCTCCTCCCTTCTTTTCTTTTTTTCTTTTTCTTTCACTCTC
TCTCTTTTCTATTTTTTTTTTTTCTTTTCTCCTAACCTTCTTCCTCCTTT
TTTTTATTGTCCTCTTATCTTTTTTTTCCTCCTTCTTTCTCTTCCTTACT
TCTCTCTCTTTTTTCCTTTCCATTCTCATCTTTTCTATTCCCCTCCCCTT
CTCCCTCCCTATCTCCTATCCTCTCTTCACTCTTCCCATCTTCTTCTTCT
CCTTTTTCCTTTTTTTTCCTCTATCTCCCTTCTCTCTTCCTCTTTCTTCC
TTCTTTCTCTTTCCTTCCTCCTTCTTTTCTCCCTTCCTTTTCCTCTACCA
ACTTTTCCATCCCCTTTTCTATATCCTCTTATCTATCTCATCTCTTCCCT
CTTCCCTTGCCTCTCCAGTACGTTTTTTTTCCCCCATAATCTTCATCCAT
TATCATTTCTCTCATAATTTTTTTTCCCTCTTATACTCTTTTTTTCTTTT
CTTCCTCTCACTTTCCTCTCTCCTGTCTCTGTATTCCTTTCTTGTCCTCT
CATCTTTCACCGATTCTATTCTCCCCCTTCTTTCACTCCCCTCCTCTCCT
CTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_g05.b1 MSMg01no421_g05.b1 CHROMAT_FILE:
MSMg01no421_g05.b1 PHD_FILE: MSMg01no421_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:32 2005
         (249 letters)



>mm_chr3_147445391_147446039
          Length = 649

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctagaagagtcagccacttggacaatggtagataattacagattaaataaaagatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccctagaagagtcagccacttggacaatggtagataattacagattaaataaaagatcac 389

                                                                       
Query: 61  atagaaggaatatacacaaatacaaaaccaacttaaaagaaatgagagaactacatgtga 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atagaaggaatatacacagatacaaaaccaacttaaaagaaatgagagaactacatgtga 329

                                                                       
Query: 121 aatgttttaagacaataaaagaaagctctgggatatttactgtttgagtaacactattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatgttttaagacaataaaagaaagctctgggatatttactgtttgagtaacactattat 269

                                                                       
Query: 181 gttataaacagaacattcaggaaataataaacaaagaaataataggatacagttcacaac 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 268 gggataaacagaacattcaggaaataataaacaaagaaataataggatacagttcacgac 209

                   
Query: 241 actgagga 248
           ||||||||
Sbjct: 208 actgagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)