Query= MSMg01no421_j20.b1 MSMg01no421_j20.b1 CHROMAT_FILE:
MSMg01no421_j20.b1 PHD_FILE: MSMg01no421_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:51 2005
(502 letters)
>mm_chr3_125131257_125132158
Length = 902
Score = 721 bits (373), Expect = 0.0
Identities = 438/475 (92%), Gaps = 26/475 (5%)
Strand = Plus / Plus
Query: 25 ctgcactgtgaaagttcaatggagaaacactacctcaatgagctgttctaagattattag 84
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 225 ctgcactgtgaaagttcaatggagaaacactacctcaatgagctgttattagattattag 284
Query: 85 atttcacccgaactggatttctaaaaacagttt-acagtagtccatgcctagagaaagtg 143
||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 285 atttcacccaaactggatttctaaaaac-gttttacagtagtccatgcctagagaaagtg 343
Query: 144 aaaataaaccatcccactccacaattagagatggctcacaactccagtccaaagagaagg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaaataaaccatcccactccacaattagagatggctcacaactccagtccaaagagaagg 403
Query: 204 taagagaatttcacaataaataaataaataaataa------------------------c 239
||||||||||||||||||||||||||||||||||| |
Sbjct: 404 taagagaatttcacaataaataaataaataaataaataaataaataaataaataaataac 463
Query: 240 aatagcaaaaacatctttcaaaaatttaaactctggctggtgagatggctcagcggttga 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 464 aatagcaaaaacatctttcaaaaatttaagctctggctggtgagatggctcagcggttga 523
Query: 300 gagcaccgattgctcttccaaaggtcctgacttcaaatcccagcaaccacatggtggctc 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gagcaccgactgctcttccaaaggtcctgacttcaaatcccagcaaccacatggtggctc 583
Query: 360 acaaccatctgtaacaaaaatctgatgccctcttctggagtgtctgaagacagctacagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acaaccatctgtaacaaaaatctgatgccctcttctggagtgtctgaagacagctacagt 643
Query: 420 gtacacacattaaataaataaataaataaataaataaataaataaataaataaat 474
||||||||||||||||||| |||||||||| ||| ||| ||| ||| ||||||||
Sbjct: 644 gtacacacattaaataaatgaataaataaacaaacaaacaaacaaacaaataaat 698
Score = 87.7 bits (45), Expect = 2e-21
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 432 aataaataaataaataaataaataaataaataaataaataaataa 476
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aataaataaataaataaataaataaataaataaataaataaataa 462
Score = 87.7 bits (45), Expect = 2e-21
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 436 aataaataaataaataaataaataaataaataaataaataaataa 480
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aataaataaataaataaataaataaataaataaataaataaataa 462
Score = 87.7 bits (45), Expect = 2e-21
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 440 aataaataaataaataaataaataaataaataaataaataaataa 484
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aataaataaataaataaataaataaataaataaataaataaataa 462
Score = 83.9 bits (43), Expect = 2e-20
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 444 aataaataaataaataaataaataaataaataaataaataaat 486
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aataaataaataaataaataaataaataaataaataaataaat 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_j20.g1 MSMg01no421_j20.g1 CHROMAT_FILE:
MSMg01no421_j20.g1 PHD_FILE: MSMg01no421_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:51 2005
(447 letters)
>mm_chr3_125321048_125321894
Length = 847
Score = 810 bits (419), Expect = 0.0
Identities = 437/443 (98%)
Strand = Plus / Minus
Query: 1 ccaagggaatggagagaattataaattttctgaatctattttaagtacaccagaggggaa 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 643 ccaagggaatggaaagaattataaattttctgaatctattttaagtacaccagagggtaa 584
Query: 61 gaatattggcacagtgcttcatgcaccttcaagggttcttagccttatagttcaacatat 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 583 gaatattggcacagtgcttcatgcaccttcaagggttcttagtcttatagttcaacatat 524
Query: 121 aaatatatatagaatttcagacactactgatccaaattcaaaatgatgctgtcccatctg 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaatatatatagaatttcagacagtactgatccaaattcaaaatgatgctgtcccatctg 464
Query: 181 ataataatattgtgtccaggatgctagcagtggaagatacttctgtactttatcatgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ataataatattgtgtccaggatgctagcagtggaagatacttctgtactttatcatgtat 404
Query: 241 ctaccagtaaataccatcaagctgtatctattcttgtatatgttgatgacatatgttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctaccagtaaataccatcaagctgtatctattcttgtatatgttgatgacatatgttgat 344
Query: 301 gtcttgtttcttccaaatttaaaatttacaaagattctcatttacaatactgatctgtaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 343 gtcttgtttcttccaaatttaaaatttacaaagattctcatttacaatactggtctgtaa 284
Query: 361 tgtttcaatgaagccagagttatattccttatgttgcaaaatgagagtatttttctaaaa 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtttcaatgaaaccagagttatattccttatgttgcaaaatgagagtatttttctaaaa 224
Query: 421 ccccaattgcttgagagcacaga 443
|||||||||||||||||||||||
Sbjct: 223 ccccaattgcttgagagcacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
