BAC Information

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BAC

Clone NameMSMg01-421K10
Chromosome3 (Build37)
Map Location 43,332,197 - 43,332,503
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421K10.T7 (MSMg01no421_k10.b1)MSMg01-421K10.TJ (MSMg01no421_k10.g1)
ACCAG516227AG516228
length776773
length of high quality
(start - end)
247 (78 - 324)307 (70 - 376)
definitionCHROMAT_FILE: MSMg01no421_k10.b1 PHD_FILE: MSMg01no421_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:54 2005CHROMAT_FILE: MSMg01no421_k10.g1 PHD_FILE: MSMg01no421_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAATAACGCGG
ATTCTCTATTCATGTTACAACACCATTTAATGGGGTTCTTTGGTTTTTTT
GGCGGTTAGGTCTTTGAGTTCTCTATATATTTTAGTTATTAACCCTCTAT
CAGATGTGGGGTGTGTGAAGATTTTTCCCATTCTGTAGGTTGCCAATGTG
TCCTATTGACTGTCTTTTACCTTACAGAAGGATAATGGTTCCTGTGTAAA
AGAAAATGTATTTACCAAAATTTTAGGCAAATGGATACAATTACAAAAAA
ATAAAATAAAATCACCCCAACTGATTATATAATTACCAAAATGCAATTTG
CTATTCATTCACTCATAATTAGATATTAGCATTTGACTAAATGATAATGA
AGCAATACTTCACTGACGCAGTGAGGTTAGATGAAGAGGAGACGTATAGA
GTTGAAGAAATAGAGTAGCTTCTCTGAGTGAATTTGGGCATGTGATGATG
GAAATAGGGCATATCACATTGGGACGTGGGTGGCTGGTAAAGGGAGAAAA
TGAGGGGTTAAAGCTAGAGTTGTATGAGGAGAGCTTCTATGTAGTTGCTT
GTAAACTGCATGACATGAAAACTTCCTAGATTGTTGAATATTACCTTGTT
GAGATGCCAGGCAATGTATTATTTTTTGTTTGCCCTTGACGTTTTTTGCA
CCCCGAAACAGGCTTTCCTCTAAATGGTTACCTTACCTCCCAGATTCAGC
GTTGTATTTGCTCAACCGTACATCAC
ATACTGTTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCGCCAATCTGGATACTTGATTGTAAACAAACACAAGAG
CCATCAGGGTAATATGAAAACATTATAAAAGATATTATGCTTGTAACTCA
CAATATAAGATAACCAATATTATGGTTTTAATTTTATGGATGATTTTTAC
ATTGTTCATATGATCATTAATTGTAAATAATTATTTATTTAATTTCTTTT
TATTAAAATACAATATATTATATTTTTCTCACATAATGTATCCTGATTAT
GTTTTATCTTCCTTTTACACCTTCCATTTCCTCTCTATTGTTTTCCAATC
CAGATTCATTATAATCTGTCTGTCATCGTAAATAAACTATTCTATAAGAG
ACAGAAATAAAAAAATATATATATTAAAAACTGTAATACAAAAAATAACT
AAACATTTGAAATTAGTCAAAACAAACAGAAGGAAAAGATGTCAAGAAAA
GGAACAAAAGCATTGCATTATTATTCTTTGTGACATATGAAAATTTATGC
AAAATATTACTCTAATAACATGCATGTCACTATGTGGTGATGGTGGCACT
AATCTTTATTCTCATGACTGTTTGTATATTCTAGTTATTCTCCTTGCATT
TGTGGTCTTTCTGGTCTTACTATTCAGTTACTCTTACTACCCTATCTCTC
CTTATAATTCCTAATCCCTTACTAATTCTTTTTTAAAATTTACACTATTT
CCCTAACTTAATTTTCTATCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_k10.g1 MSMg01no421_k10.g1 CHROMAT_FILE:
MSMg01no421_k10.g1 PHD_FILE: MSMg01no421_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:54 2005
         (307 letters)



>mm_chr3_43331997_43332703
          Length = 707

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggatacttgattgtaaacaaacacaagagccatcagggtaatatgaaaacattataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggatacttgattgtaaacaaacacaagagccatcagggtaatatgaaaacattataaa 260

                                                                       
Query: 61  agatattatgcttgtaactcacaatataagataaccaatattatggttttaattttatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatattatgcttgtaactcacaatataagataaccaatattatggttttaattttatgg 320

                                                                       
Query: 121 atgatttttacattgttcatatgatcattaattgtaaataattatttatttaatttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatttttacattgttcatatgatcattaattgtaaataattatttatttaatttcttt 380

                                                                       
Query: 181 ttattaaaatacaatatattatatttttctcacataatgtatcctgattatgttttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttattaaaatacaatatattatatttttctcacataatgtatcctgattatgttttacct 440

                                                                       
Query: 241 tccttttacaccttccatttcctctctattgttttccaatccagattcattataatctgt 300
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttttacaccttccaggtcctctctattgttttccaatccagattcattataatctgt 500

                  
Query: 301 ctgtcat 307
           |||||||
Sbjct: 501 ctgtcat 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)