BAC Information

Click to search

BAC

Clone NameMSMg01-421K16
Chromosome3 (Build37)
Map Location 83,515,065 - 83,515,312
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
Downstream geneSfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421K16.T7 (MSMg01no421_k16.b1)MSMg01-421K16.TJ (MSMg01no421_k16.g1)
ACCAG516239AG516240
length731760
length of high quality
(start - end)
247 (82 - 328)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no421_k16.b1 PHD_FILE: MSMg01no421_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:55 2005CHROMAT_FILE: MSMg01no421_k16.g1 PHD_FILE: MSMg01no421_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTGAACTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGA
ATCCGCGGAATTCCAGATCTGATTGCTGAATATTGCTTTAACCCACACAT
GTTATTTCTGGAGATGGTGTGGCTCACGGAGAGACGTCTGGGGCAGCCCG
ATCACACTCCTTCAGGGGCCCCTCTGCCTTTTTTGGGCTCAGAGTTCTGA
ATTGCACTTTTGACCTCCTCCTGAACAGCTTGCAAGGCACAATTGAGCTG
AAGCAGGACCCCCCAGTTGCTGCTCTGAATGTACGGTCTGTGGCCTGACT
TTCCATGTCAGTGTAGTGTTCGCTGGTTTGTTTGTTGTGCAGAGACTTAC
ATGAAGGGAACTTCATAAACAAACGTTCAGAAAGAGGACACTTAGACTTT
GCAGGTGGAAAGGGGAACTTCTACAGAAACCCATCCCGCATTTCTCTTAC
AGGGGAAGATTGGTTTTTTAACCATTCCCCAAAAGTAAAAAAGCGGGGTA
AAAAAATGTGAAAAAAAACCCCCCGCGGGAAGCTGGGTGGGGCACAAAGC
CAAAAAAGTTGGTTAAAGGGTTTAAAATTGGTACCCCAAAAAGGGGGTGG
GGGAACATTGGTTTGGAAAAAAGGGCCAAAAACAAAAAGCCCCTCTTTAA
ATGGGGGTTAACAACTTTGGGGGGCCCCCCAATTACAAAGCCCCCCACAC
AAAATACTCGATAATATATGGCTTTTTTCTT
NNNGGCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCCTTAAGCCCCTTACC
CCATAAAAACCCCTAGCTTTTGAGCCTCGTGGCCGACATCCGTTATCTCC
TGTGTGGGATGCATGTCGGTCCGGAGCTCCGTAATTAAACGACCTCATGT
AATTACATCAAGATGGTCCTTCATGATTTTTTTTGGGTGCACGCTGAATC
TGGAATTGAGTGGGGGGTTCCCAATAGGTTCTATCATTTGGAGGTCCCAC
TGAGATCTGCGTGACACCTGGGAACCCTGTTTGTACCCCTTGGAGGTACG
TTTGTTTGTGTGAGTCTTATATGTTATCTGATGTCTAAGTGTCTAAGTGT
GGCACCTCTGAATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTT
GAGTCCCACCTGTGTTTGCAGTTCTGGTATTCTGTATTCTGGCAGCTGCC
ACTGTGGACTGTAAGGACCTAGTGGCTGTGGGAGAAAGATGTTCTATGGC
TCCACAGGCTGCAACCTTGGAAGATGTTCCAAGGGTGACCCTTGTAGGAA
GTGCCCATGTATTACGTACCGTTTGGAAAGGATTGGCTGTTCTCTTGTCT
TATATGCGTTAAAATTTCTCTCTTCTTTCTTGCCAAATCGGCATATTTTA
ATTTGTTAACTCTATCTCTCTCTTCTGTATCGAATTTCTTATTCCGCATT
TCTATAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_k16.b1 MSMg01no421_k16.b1 CHROMAT_FILE:
MSMg01no421_k16.b1 PHD_FILE: MSMg01no421_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:55 2005
         (247 letters)



>mm_chr3_83514865_83515512
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%), Gaps = 1/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctttaacccacacatgttatttctggagatggtgtggctcacggagagacgtctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctttaacccacacatgttatttctggagatggtgtggctcacggagagacgtctgg 260

                                                                       
Query: 61  ggcagcccgatcacactccttcaggggcccctctgccttttttgggctcagagttctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ggcagcccgatcacactccttcaggggcccctctgccttttttgggctcagagctctgaa 320

                                                                       
Query: 121 ttgcacttttgacctcctcctgaacagcttgcaaggcacaattgagctgaagcaggaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcacttttgacctcctcctgaacagcttgcaaggcacaattgagctgaagcaggaccc 380

                                                                       
Query: 181 ccc-agttgctgctctgaatgtacggtctgtggcctgactttccatgtcagtgtagtgtt 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccagttgctgctctgaatgtacggtctgtggcctgactttccatgtcagtgtagtgtt 440

                   
Query: 240 cgctggtt 247
           ||||||||
Sbjct: 441 cgctggtt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)