Query= MSMg01no421_k18.b1 MSMg01no421_k18.b1 CHROMAT_FILE:
MSMg01no421_k18.b1 PHD_FILE: MSMg01no421_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:56 2005
(588 letters)
>mm_chr3_59165740_59166727
Length = 988
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%)
Strand = Plus / Minus
Query: 1 cgcatgccttgaccttgaggaacttagccatctgcactctgagcagaattctgctgtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cgcatgccttgaccttgaggaacttagccatctgcactctgagcagaattctgctgtaac 729
Query: 61 tcccaattgccgtccactgaaacttaggtgggtggaagtgaaatcagccccttgcgtcct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tcccaattgccgtccattgaaacttaggtgggtggaagtgaaatcagccccttgcgtcct 669
Query: 121 tgggaaaatttggtgtactataccacatgttttctattgcataagatgatgcagccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgggaaaatttggtgtactataccacatgttttctattgcataagatgatgcagccattt 609
Query: 181 cccttcaagtaccaaactgacattcatttaattattctaaattaggctttcagtcaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cccttcaagtaccaaactgacattcatttaattattctaaattaggctttcagtcaaaat 549
Query: 241 cctgttaatattgtcctttagcaaaagatctacagcaaccatgggtaagcatttttgagt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cctgttaatattgccctttagcaaaagatctacagcaaccatgggtaagcatttttgagt 489
Query: 301 ccaggaaaatgaaggaattgttctggatatatattttttgccatactttcttaacaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccaggaaaatgaaggaattgttctggatatatattttttgccatactttcttaacaagat 429
Query: 361 tagtaactaaattgaaatctacagccaagggaatacttcttatgctttctcccattgaac 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tagtaattaaattgaaatctacagccaagggaatacttcttatgctttctcccattgaac 369
Query: 421 aaatgtctaaataattatctgcagatgtgtattaaaatgtgtagagagctaaattgccct 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 aaatgtctaaataattatctgcagatgtgcattaaaatgtgtagagagctaaattgccct 309
Query: 481 cagtgctaccttgtatgaaaatgtatcctgaggttctctttgcatactaggaacttgagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagtgctaccttgtatgaaaatgtatcctgaggttctctttgcatactaggaacttgagc 249
Query: 541 tccaaatagctccaaataaaatcctcccagggaaaagaaaaatcctaa 588
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tacaaatagctccaaataaaatcctcccagggaaaagaaaaatcctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_k18.g1 MSMg01no421_k18.g1 CHROMAT_FILE:
MSMg01no421_k18.g1 PHD_FILE: MSMg01no421_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:56 2005
(408 letters)
>mm_chr3_58970923_58971735
Length = 813
Score = 648 bits (335), Expect = 0.0
Identities = 382/411 (92%), Gaps = 24/411 (5%)
Strand = Plus / Plus
Query: 17 cccatttaggttattgacttgaggaagggtttgagagggggctgttggga---------g 67
||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 208 cccatttcggttattgacttgaggaagggtttgagagggggctgttgggaagggctagag 267
Query: 68 gtaggacggggaggagggaacatgatatatttctattttaattaacacatatcaaataaa 127
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 268 gtaggacggggaggagggaacatgatataattctattttaattaacacatatcaaataaa 327
Query: 128 tagtatataaactataaaacaatacagggcatggcccctttctttgagaaacccattatc 187
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 328 tagtatataaactataaaacaatatagggcatggcccctttccttgagaaacccattatc 387
Query: 188 aaaaaggaaaaaaaaagttaaa-----gagtattttttgtttgtttataatatcttgatt 242
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaaggaaaaaaaaagttaaaataaagagtattttttgtttgtttataatatcttgatt 447
Query: 243 tatgcta-----tttttttttagttccctgagcatcttcccatttccttttgtggaattg 297
||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tatgctaaacagtttt-----agttccctgagcatcttcccatttccttttgtggaattg 502
Query: 298 tgacattcaagttcactcctgtttatttttttctcaaagcttccagccccacagcccacc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgacattcaagttcactcctgtttatttttttctcaaagcttccagccccacagcccacc 562
Query: 358 ctgttaatgactcacccaacaggacatgctcatagttgtactgtttccagg 408
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 ctgttaatgactcacccaacagtacatgctcatagttgtactgtttccagg 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 813
Length adjustment: 9
Effective length of query: 399
Effective length of database: 804
Effective search space: 320796
Effective search space used: 320796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
