BAC Information

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BAC

Clone NameMSMg01-421L22
Chromosome3 (Build37)
Map Location 37,599,629 - 37,600,083
singlet/doubletsinglet
Overlap genenone
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
Downstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421L22.T7 (MSMg01no421_l22.b1)MSMg01-421L22.TJ (MSMg01no421_l22.g1)
ACCAG516299AG516300
length775802
length of high quality
(start - end)		459 (51 - 509)249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no421_l22.b1 PHD_FILE: MSMg01no421_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:02 2005CHROMAT_FILE: MSMg01no421_l22.g1 PHD_FILE: MSMg01no421_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGAT
CCGCGGAATTCACAGCAATCCTCCTGCCTTGGCTACCCAAATGCTGCGAT
TACAGATATGTGTCATCACATCCAGCTACGAGTCTTCCTTTCTAAAGGTT
CTATGTCATGTAAAACTTTGATCAGGAAAATGTACGACTTTTTCCTGTTA
TAGAGGATGGCTAGCTGGGAACAGCATTACACCTTGAGCTCCATGACAGG
AAGGTCCCACACTCCCTTGGGCACCAATCCTCCAGATTGCTTAAGCCTTG
ATCTTAAGTAAAAGGTGCATAGCACTCTAGAATTGGTTTTTCAAACTCCT
TTCACACCCATGGAGAAGCCTAATAAACCTAAACGTCAGTAAAGAACGAA
AGGCCTGTTCTCATGGGAAGAAAGGGCATCAAAATAAACAACAGCCACAG
ACAGGTAAGAGCAAAACTCCACTAAGATAGTGTACAGTTAGTTTCCCATT
TGATAACCAGTGTGTGTTTTCAATCCCAGAAAGACTGAAACAGAAGAGAC
TCAGCCTTCTGGGATGCGAGCAAGTTCTGCCAGCTCTCATTTTTCCCATT
CTGGGTTCCCACTTTGGGTCCCCAATTCTAAAGTTCACATGGAGGAGATA
TGAATTTCACCCACAATCACTGCCTCTTACTGGTTCTTTGGGGGCCCTTG
TTTTACGGAAATAAAGTTTTATTTGGTGGTCCTTAAAACCTGGGAAAAAA
AATTCCTTTATGGATCCCCTTACTG

AAACCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGAAATTTTGATGGGGAA
TGTAGTGGAACTGTAGAATGCTTTTAGTAGGGTGGCCATTACTCTCTTAA
TATCACTGGGTGAGCATGGGTCTTCTTATCTTCTTATATCTTCTATAATA
CTTTCTTCAAAGACTTGAAGATTTCTTCATGCAAGTCTTTCATTTGCTTG
GTTAGAGTTACCCCAAGATATTTTATTTTGTTTGAGGTTATTGTGAAGGG
TTGTTTCCCTGATTTTTTTTTCCCCAGTCTCTTTGTCATTTGTATATAGA
AGGGCTGCTAATTTTCTTTAGTTGATCTTGTATTCAGCTACTTTGCCGAA
AGTGTTTATCAGCTATAGGAGTTTTCCAGTACAATTTTTAGGTTGATTTA
TGTATACTGCAATTTTGCAAATGACAAAACTTTTTTCCTCCCTTTCCCCT
TGTTAATCCCTTTTATCCTCCTCTGTTTGTTTTACTGCTCTGACCCTCGA
ATTATTTTATATTAATCGGCTTGGTTGTGGTGCAATAAATGCCTATCCTT
GCCTGCACTCGATTTTTCATGGACCTTCCCTCTTTGTCTCTCTCTCTCCT
ATTTTTCTATTTTTTCGCTTCTTGTCTCCTTCCTCTCTTATTGTTTTCCC
GACCTCTTATCCCTTTCTTTCTCTCATCTCCTTATTCTTCCTTACTCTTA
CTTCTTATACTCTCTTCTGTTTTTTGTCCTTTTTTCATACCTTTTTTTCT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_l22.b1 MSMg01no421_l22.b1 CHROMAT_FILE:
MSMg01no421_l22.b1 PHD_FILE: MSMg01no421_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:02 2005
         (459 letters)



>mm_chr3_37599352_37600210
          Length = 859

 Score =  880 bits (455), Expect = 0.0
 Identities = 455/455 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcacagcaatcctcctgccttggctacccaaatgctgcgattacagatatgtgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggaattcacagcaatcctcctgccttggctacccaaatgctgcgattacagatatgtgtc 673

                                                                       
Query: 65  atcacatccagctacgagtcttcctttctaaaggttctatgtcatgtaaaactttgatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atcacatccagctacgagtcttcctttctaaaggttctatgtcatgtaaaactttgatca 613

                                                                       
Query: 125 ggaaaatgtacgactttttcctgttatagaggatggctagctgggaacagcattacacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaaaatgtacgactttttcctgttatagaggatggctagctgggaacagcattacacct 553

                                                                       
Query: 185 tgagctccatgacaggaaggtcccacactcccttgggcaccaatcctccagattgcttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgagctccatgacaggaaggtcccacactcccttgggcaccaatcctccagattgcttaa 493

                                                                       
Query: 245 gccttgatcttaagtaaaaggtgcatagcactctagaattggtttttcaaactcctttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gccttgatcttaagtaaaaggtgcatagcactctagaattggtttttcaaactcctttca 433

                                                                       
Query: 305 cacccatggagaagcctaataaacctaaacgtcagtaaagaacgaaaggcctgttctcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cacccatggagaagcctaataaacctaaacgtcagtaaagaacgaaaggcctgttctcat 373

                                                                       
Query: 365 gggaagaaagggcatcaaaataaacaacagccacagacaggtaagagcaaaactccacta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gggaagaaagggcatcaaaataaacaacagccacagacaggtaagagcaaaactccacta 313

                                              
Query: 425 agatagtgtacagttagtttcccatttgataacca 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 312 agatagtgtacagttagtttcccatttgataacca 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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