Query= MSMg01no421_n17.b1 MSMg01no421_n17.b1 CHROMAT_FILE:
MSMg01no421_n17.b1 PHD_FILE: MSMg01no421_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:10 2005
(249 letters)
>mm_chr3_129033259_129033909
Length = 651
Score = 462 bits (239), Expect = e-135
Identities = 246/249 (98%), Gaps = 2/249 (0%)
Strand = Plus / Plus
Query: 1 ctccagttttgaaaggtgacatgcagcttttttttt--cagtcatttaactctgcagaat 58
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ctccagttttgaaaggtgacatgcagctttttttttttcagtcatttaactctgcagaat 260
Query: 59 ctctggaggcaaatgtctaagcaagttcaagtccagagacaactcaagtgtagcatggcc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggaggcaaatgtctaagcaagttcaagtccagagacaactcaagtgtagcatggcc 320
Query: 119 tgggtccctggtcacctctcacagggcggtggttttgtgaattcaaggaaggagcttaca 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtccctggtcacctctcacagggcagtggttttgtgaattcaaggaaggagcttaca 380
Query: 179 ccgtttaccaagaactgataaaagccactgggtcacgtgaatatcagatagaaagtaata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtttaccaagaactgataaaagccactgggtcacgtgaatatcagatagaaagtaata 440
Query: 239 gattaggta 247
|||||||||
Sbjct: 441 gattaggta 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space: 154080
Effective search space used: 154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no421_n17.g1 MSMg01no421_n17.g1 CHROMAT_FILE:
MSMg01no421_n17.g1 PHD_FILE: MSMg01no421_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:10 2005
(491 letters)
>mm_chr3_129192957_129193847
Length = 891
Score = 915 bits (473), Expect = 0.0
Identities = 485/491 (98%), Gaps = 4/491 (0%)
Strand = Plus / Minus
Query: 1 actctgtagaccagactggtctcatgccgctgccttatgaatacttgcagcaccacacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 actctgtagaccagactggtctcatgccgctgccttatgaatacttgcagcaccacacct 587
Query: 61 ttaattggatcaagttagattggcctggccaatttaaagctaaataaataaataaataaa 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 586 ttaattggatcaagttagattggcctggtcaatttaaagctaaataaataaataaataaa 527
Query: 121 tagattaaggactaactaagctaaataaataaataaataaataaataaatagattaagga 180
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 526 tagattaaggactagctaagc----taaataaataaataaataaataaatagattaagga 471
Query: 181 ctaactaattagagaagaattgagtgcctatttaaccatttacctaacgtctagtttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctaactaattagagaagaattgagtgcctatttaaccatttacctaacgtctagtttcca 411
Query: 241 atgctgtctgccacaaaccaatgaatttcatttaaaactttcattttattttgtgccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgctgtctgccacaaaccaatgaatttcatttaaaactttcattttattttgtgccttt 351
Query: 301 atgcattatgtgtatgcttgatgcccttgggagtcagatgagggcattggggtctcctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atgcattatgtgtatgcttgatgcccttgggagtcagatgagggcattggggtctcctgg 291
Query: 361 aaatggagttatgaatagttgtaaatcaacatgtgggtgttgggaatcgaacttgggtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaatggagttatgaatagttgtaaatcaacatgtgggtgttgggaatcgaacttgggtcc 231
Query: 421 tctggaagaacaacaggtgttcttaactacagagtggtctctcccactgacaactcccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tctggaagaacaacaggtgttcttaactacagagtggtctctcccactgacaactcccaa 171
Query: 481 cttgaacacat 491
|||||||||||
Sbjct: 170 cttgaacacat 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
