Query= MSMg01no421_p12.b1 MSMg01no421_p12.b1 CHROMAT_FILE:
MSMg01no421_p12.b1 PHD_FILE: MSMg01no421_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:19 2005
(598 letters)
>mm_chr3_111287598_111288595
Length = 998
Score = 1056 bits (546), Expect = 0.0
Identities = 567/574 (98%)
Strand = Plus / Minus
Query: 24 gtatagtccataatgaaaaatttaaaatcaaatcttatagtcagagaagaataatctcta 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gtatagtccataatgaaaaatttaaaatcaaatcttatagtcagagaagaataatctcta 738
Query: 84 aaaatagatgtatttgcagtttaaaataaatactagtggtaatgcatcattgagaaaatt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaatagatgtatttgcagtttaaaataaatactagtggtaatgcatcattgagaaaatt 678
Query: 144 actcaaaaatgggtctgaattggttaaaatatctaggattaaggcacttgcagaatttcc 203
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 677 actcaaaaatgggtctgaattggttaaaatatctaggattaaggcacttgctgaatttcc 618
Query: 204 attaaagttccacaaagacactgaccttcgtttcttcattagagtaaaagctttgtgaat 263
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 617 attaaagttccacaaagacactgaccttcctttcttcattagagtaaaagctttgtgaat 558
Query: 264 gagcttttatctgtattttcatttcaatgcagttatttctatgagaggaacagtgaagcc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagcttttatctgtattttcatttcaatgcagttatttctatgagaggaacagtgaagcc 498
Query: 324 tttgttttgttccttttaaaagatcatagggagcagataagaccattaaggaaaattcca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttgttttgttccttttaaaagatcatagggagcagataagaccattaaggaaaattcca 438
Query: 384 cttccatcagatagcacgctgcctcttcagtactggtgaagtacaataagtttgaacctt 443
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 cttccatcagatagcacgctgcctcttcagtactggtgaagtacaataagcttgaacctt 378
Query: 444 gctgtgtggtaattatgatgccaaaattttttcaggcttgatgaggtaacttcttatcat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gctgtgtggtaattatgatgccaaaattttttcaggcttgatgaggtaacttcttatcat 318
Query: 504 ttctatactttgaataaaggacaaaaattatttgactaaaatgatatacctttgggaagg 563
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 317 ttctatactttgaacaaaggaaaaaaattatttgactaaaatgatatacctttggaaagg 258
Query: 564 aaagcactatcttataaagttattctattttatt 597
||||||||||||| ||||||||||||||||||||
Sbjct: 257 aaagcactatcttctaaagttattctattttatt 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_p12.g1 MSMg01no421_p12.g1 CHROMAT_FILE:
MSMg01no421_p12.g1 PHD_FILE: MSMg01no421_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:19 2005
(495 letters)
>mm_chr3_111095773_111096666
Length = 894
Score = 922 bits (477), Expect = 0.0
Identities = 489/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatggggttatttgattttctggagtccacctt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagctctgagccccattttttaatggggttatttgattttctggagtccacctt 260
Query: 61 cttgagttctttatatatattggatattagttctaacccaataaagagtcttctggtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattggatattagttctaacccaataaagagtcttctggtatt 320
Query: 121 tcttcccaggaggtacaccaccatgctcccagaagaaatacttttgaaatttcatttgtg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tcttcccaggaggtacaccaccatgctcccaaaagaaatacttttgaaatttcatttgtg 380
Query: 181 cttaatactgttttgaatatcaaatcaattaaatcatgtatatatggacctgtgcatcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaatactgttttgaatatcaaatcaattaaatcatgtatatatggacctgtgcatcac 440
Query: 241 ttctttgtagcccagtattgctgagatctatgtgtaaaagctaggctgcttgtacaatga 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ttctttgtagcccagtattgctgagatctatgtgtaaaagctaggcttcttgtacaatga 500
Query: 301 gctgatctgatattaaagctctgttaatgctctaggttaaactgtcaaagccacgaaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgatctgatattaaagctctgttaatgctctaggttaaactgtcaaagccacgaaaag 560
Query: 361 gcagaaattcccactgtttttttttttcctttccctatggctgcattattactaattgat 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 gcagaaattcccactgtttttttttt-cctttccctatggctgcattattactaattgat 619
Query: 421 ggtatggctttggaaggtagagtgaagaatttatttctaaaaaataaaaatattattatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggtatggctttggaaggtagagtgaagaatttatttctaaaaaataaaaatattattatt 679
Query: 481 taagtgatagctt 493
|||||||||||||
Sbjct: 680 taagtgatagctt 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
