BAC Information

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BAC

Clone NameMSMg01-422C07
Chromosome3 (Build37)
Map Location 31,792,133 - 31,960,252
singlet/doubletdoublet
Overlap geneKcnmb2
Upstream geneGpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422C07.T7 (MSMg01no422_c07.b1)MSMg01-422C07.TJ (MSMg01no422_c07.g1)
ACCAG516604AG516605
length736737
length of high quality
(start - end)
247 (63 - 309)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no422_c07.b1 PHD_FILE: MSMg01no422_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:32 2005CHROMAT_FILE: MSMg01no422_c07.g1 PHD_FILE: MSMg01no422_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,792,133 - 31,792,378)(31,960,007 - 31,960,252)
sequence
TGCGGCGCTATACGACTCCTATAGTCAGGACTCGGCGGAATTATGAAATG
TTGCTAATACAAGAGAATGCTAAGTTTTAAAAGTCGTCATATCAGAAGTT
CTTTTTAGCTTGCGGCTTAAAAATCATTTCCTGCACAGCCCAGTGTTCTT
TAAAAGCAAATACTCACCCATGTACTGTCAGCTATGTGAGGTTTGTTTTT
ATTTTCTTCTTTTGCCTTCTATTTTCTCAAAATTTTACTTATTTCCCTTT
CTAAAACCTTTTGTGTCTGTGTGAATCCACTTTTGTACACATGTGTGACA
CTATTTGATTACTCATGTGTGAGTGTATGTATATATCTGGATAAACTTAT
GCATGCATGTATGAGTCTGTGTGTGTGCCTGTAGGTGCACATGTGCATGC
GTGTGCATGCTCACATATACAAGTGTGGGTGCTCATGTGAAGAGCAGTGG
ATAATATTGAGCGTTGCTCCTCCTTGCCTTCTCCTGTGTTTGGGACAGGG
TCTTCACCATTGCATATGTTGAAGCTAGCTGACCTGATAGTTTCTGTTGA
CTTTCTTTCTCCTGCCTGACATCTTTACAGCTGCGACCCTGGAATCACAG
TCATGTGTTCTCTCGTGCCCTTTCTTGACGGGTTTTTGCCAATTCCAACT
CAGGTTTTTCCTGTTTTGTCCTGCCAATAACCTTCACTGACCAATAATTC
CATTTTCTTCCAAACACTGTTCCACTTATTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGGATTTTGACATGGGATTCCAGTTGCTT
TACTAATAAAATTGGTCCAAACTTTTTGTTTCTGGAATTGTGATGGAGAT
AAACAAGGTATATATGGAGCCGATTAAATAAGCAATGCAAAATAAAGCCC
GAGAGAGGGCAAGCAAGACCAGAGCTGTTTGGATTAACATCAATGTGTCT
GATTTTAATTTCTATTTAGAATATGTCGAACTTCTAACCTGCAATTCTGA
TAGTTTGTTTGAAGTTTCTTTTTTTAACCAAATGAACAGCATAATATTTT
AAAACATTCATATATATCTGTCTCAGAAATTGTCCTTGCTGGTGGTTGTG
TTAGAAACTTTTGCTATACAAACACCCATTTGTAGAGTAACCATTTTGGG
TTACCCCAATTTATGCTATTGCCCTGCACTGTTAGCTAGCTTCAGAAAAC
TTGTACATTATTAAACTCAATCTTCTCCTGTTCATGCATGGAATCCAGGG
TTCCCTGGTTCATGTATAGAATTCGGGCTTTCTTTTCCAGTTCTTATTCC
AAGCACCCCCACATTTTTCTTGTTTCCATCCCTAATCGAATTTGTTGAAT
GAGAATGTTTTTGACCTGTTTTACCGGGTGTAATCTCTGAGTATTCCTTT
GTTTTTTTTCTTTTCTGTTATCTTGTTTTTGCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_c07.b1 MSMg01no422_c07.b1 CHROMAT_FILE:
MSMg01no422_c07.b1 PHD_FILE: MSMg01no422_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:32 2005
         (247 letters)



>mm_chr3_31791933_31792579
          Length = 647

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaatgctaagttttaaaagtcgtcatatcagaagttctttttagcttgcggcttaaaa 60
           ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct: 201 gagaatgctaagttttaaaagtcgtcatatcagaagtcctttttggcttgtggcttaaaa 260

                                                                       
Query: 61  atcatttcctgcacagcccagtgttctttaaaagcaaatactcacccatgtactgtcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatttcctgcacagcccagtgttctttaaaagcaaatactcacccatgtactgtcagc 320

                                                                       
Query: 121 tatgtgaggtttgtttttattttcttcttttgccttctattttctcaaaattttacttat 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tatgtgaggtttgtttttattttcttcttttgccttatattttctcaaaattttacttat 380

                                                                       
Query: 181 ttccctttctaaaaccttttgtgtctgtgtgaatccacttttgtacacatgtgtgacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctttctaaaaccttttgtgtctgtgtgaatccacttttgtacacatgtgtgacact 440

                 
Query: 241 atttga 246
           ||||||
Sbjct: 441 atttga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no422_c07.g1 MSMg01no422_c07.g1 CHROMAT_FILE:
MSMg01no422_c07.g1 PHD_FILE: MSMg01no422_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:32 2005
         (246 letters)



>mm_chr3_31959807_31960452
          Length = 646

 Score =  406 bits (210), Expect = e-118
 Identities = 237/246 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggattttgacatgggattccagttgctttactaataaaattggtccaaactttttgt 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| 
Sbjct: 446 aaaggattttgacatgggattccagttgctttactaataaaagtggtcaaaactttttgc 387

                                                                       
Query: 61  ttctggaattgtgatggagataaacaaggtatatatggagccgattaaataagcaatgca 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 386 ttctggaattgtgatggagataaacaaggtatatatggagccgcttaaataagcaatgca 327

                                                                       
Query: 121 aaataaagcccgagagagggcaagcaagaccagagctgtttggattaacatcaatgtgtc 180
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaagaaagcccgggagagggcaagcaagaccagagctgtttggattaacatcaatgtgtc 267

                                                                       
Query: 181 tgattttaatttctatttagaatatgtcgaacttctaacctgcaattctgatagtttgtt 240
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 266 agattttaatttctatttagaatatgttgaacttctaacctgcaattctgatagtttatt 207

                 
Query: 241 tgaagt 246
           ||||||
Sbjct: 206 tgaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)