BAC Information

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BAC

Clone NameMSMg01-422E01
Chromosome3 (Build37)
Map Location 22,296,005 - 22,296,266
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422E01.T7 (MSMg01no422_e01.b1)MSMg01-422E01.TJ (MSMg01no422_e01.g1)
ACCAG516687AG516688
length720728
length of high quality
(start - end)
48 (65 - 112)263 (325 - 587)
definitionCHROMAT_FILE: MSMg01no422_e01.b1 PHD_FILE: MSMg01no422_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:39 2005CHROMAT_FILE: MSMg01no422_e01.g1 PHD_FILE: MSMg01no422_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTATACGACTCCTATTTTCAGAAGAGCGCGGAATTCCACTAG
TTTCGACCAGAAAAGAATTCCTCCAGACCATAATAATCAGAACAACAAAT
GCACTAAATACAGATGGAATATTAAAAGCAGTGAGAAAAAGGATCGGGTA
ACATATTAAGGCAGGCCTATCAGAATTATACCAGATTTTTCACCAGAGAC
TATGAATGCCGGAAGATCCTAGAGAGATGTTATACAGACGCTAAGAGAAC
AGAAATGCCAGCCCGGGCTACTATGCCCAAGCAGACTTTGCAATTACCGT
AGATGGATTTATACGTGTATTCCATGACAAAGCCAAGGTCGCACATTATC
TTTCGATGAATCCGGCCCCTCAAAGGATAGTAACAGAATAAAAAATACAT
ACGCAGAAACAATGGCCGATAAAAAGTAGTACAGTAATCCTTCAAAAAAC
CTAAAGGAAGATAGCCACAAGAACGGAATGCCCACGTTGACAACTTTTAT
TATAGTAAGCCAACATTACTTTTTCCTCCTACCTTTTAATATTAACGGAC
TCCAACTCCCCCATAATTGACATATACTAACGGACTGGCTTCTCTTACAT
TTACCCACTATTCTGGTGGTCTCGTGATACCTCTCTCCCGGGTAAAAGAT
TTTTTTTTCTTTCAATCGATCGGCAGGTACCCTATTTTGCCTTTCCCCCC
GCCTTGCACACCCTTTCTTT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCCAGAAATTCCACTCTAAGAAAGGCATGATTTTTCTGATGTCAC
TCACTACAACACTATCAAGACATTATTATTCAACATGTGGACCAAACATT
CCTGAGAAGAAGCATACAGGGAGGGACTGAAGATGGTTCAGTGCTTAAAA
ATGTTTACCCTGTCAGCATGAGAGCTAGGGTTTGGATCCCCAGCACCCAT
ATAAATGCCTGGGGGATGTGGGGGGCTACATATAGTTCCAGCCTATAAAG
GTGGAGAGAGTGTAGCCTAGAGAAACCTGAGTTGCAAAGCTAGCCACTTA
GGTGAGCTCTGTATTTGATGGGGAGTCGCTGCTCAATCAGTAAGGTAAAA
GAGTGATAGAGGGTGATTTTTCAATACTAGTCTCCTACTTTCACATACAT
TTAAACATATATGCCCAAACACATGTAAAATATGCACATATATATGCTAA
ATACATGCACATATGTACAAAGGAAAATGGAAAAAAAGAAAAAAAAGGCA
TAAAGGCATGCAGGAGAATGGTACTTCTATTTTGTGCGCCATAACCGGTA
TGGGGGATCTTTTTTTTTATATTGTCCCAATCAATCTTGATAGCAGCCTT
AGGTAGAGACTGTATTAGATGCTGGTAAGGAAAATTCCGGTAATGAAGTG
GGAATATGTGCCTTGGATAAATTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_e01.g1 MSMg01no422_e01.g1 CHROMAT_FILE:
MSMg01no422_e01.g1 PHD_FILE: MSMg01no422_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:40 2005
         (263 letters)



>mm_chr3_22295805_22296467
          Length = 663

 Score =  478 bits (247), Expect = e-139
 Identities = 259/263 (98%), Gaps = 1/263 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgagttgcaaagctagccacttaggtgagctctgtatttgatggggagtcgctgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 acctgagttgcaaagctagccacttaggtgagctctgtatttgatggggagtccctgctc 260

                                                                       
Query: 61  aatcagtaaggtaaaagagtgatagagggtgatttttcaatactagtctcctactttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcagtaaggtaaaagagtgatagagggtgatttttcaatactagtctcctactttcac 320

                                                                       
Query: 121 atacatttaaacatatatgcccaaacacatgtaaaatatgcacatatatatgctaaatac 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcatttaaacatatatgcccaaacacatgtaaaatatgcacatatatatgctaaatac 380

                                                                       
Query: 181 atgcacatatgtacaaaggaaaatggaaaaaaagaaaaaaaaggcataaaggcatgcagg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 atgcacatatgtacaaaggaaaatggaaaaaaagaaaaaaa-ggcataaaggcatgcagg 439

                                  
Query: 241 agaatggtacttctattttgtgc 263
           |||||||| ||||||||||||||
Sbjct: 440 agaatggtgcttctattttgtgc 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)