BAC Information

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BAC

Clone NameMSMg01-422G01
Chromosome3 (Build37)
Map Location 146,122,382 - 146,122,632
singlet/doubletsinglet
Overlap geneCtbs, Spata1
Upstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip
Downstream geneGng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422G01.T7 (MSMg01no422_g01.b1)MSMg01-422G01.TJ (MSMg01no422_g01.g1)
ACCAG516781AG516782
length755738
length of high quality
(start - end)
149 (126 - 274)253 (65 - 317)
definitionCHROMAT_FILE: MSMg01no422_g01.b1 PHD_FILE: MSMg01no422_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:49 2005CHROMAT_FILE: MSMg01no422_g01.g1 PHD_FILE: MSMg01no422_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAATACGACTCCTATTTCCGAGGATGCGCGGAATTCCGCAG
TTGCTCCTTACCAACAGTCTGTTTTACGGGAACCTTTATGACCATGACCC
ACAGTTCTGGCTCCGGAATGAGGGATCTTCCCTGCGCCGGGGATGGTAAC
CGTCCCGGTTTTTCTCATCCCAGGATTTCTCGTCCCGGGTTTTTTCTTCC
CGGATTTTCTCGTCCCGGATTTCGGCACCAACTCTTGCGCTTTTTCTCAC
GGACCGGCCAGGAGGAACACAACAAGCCAGAATCTTCTGGGGCAAGAGTT
TATTGTTTACTTTTTTAGGAGCAAGAGTGCTGGCCCGCGAGGCCCCAATA
TTATTTGCGAACCCCGGTCCCTATTTAGGAGAGTTATCCTTCGCCTAGGC
CGTAGCCCTCCCTGATGGGCTGCTGCCCATCGCACGAGTTGCTGTCACGT
CTATATGCATATCGCATGGCGTGTAGACGTACCCATGGTGCAGGAGCAGA
TTTATTTGTTTACCACCTTTTCTCACAGTTTGACATTTCCTTTTTTGCGA
TTTTCCAAAGATTACCGCGTTTTTCCCTTTTACTTCTCTCACTCGTCTTG
CTCAAGTTTTACATCCTTTTGTATCACTCCACAGTTATACTACGTACTTT
TACCACACACCACCATTTTGTTTTTTACCTATACTATTCTTAAACATCTA
TATACGTTCCAGTATTTGTGCCCTTCAATGTCCTTTTTTCCTTCACCTTT
TTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAACATGTGCGTGTCATTATTGAGCAAATGTTAAAA
GCCAAATGAGAAAAATAATAAAACTGTTAGAAATAAAAGATATAAGTAGA
AAAAAGAAAAAATGAACTAGAGGACACAAGCCAGCAGCAATCTTCAAAAG
CTCTGGTTTGGGCATACATAGTGAGACCCTGTCTCCAAAAAGAAAAAGGA
AAAGAAAAAGAGAAAAAAAGAACTAGAGGAGAAATAAAAGATATGCTATG
GGGCTGGAGAGATGGTTCTACAGTTTAGAGCACTGACTGCTCTTCCAGAG
GTCCTGAGTTCACTCCCAGGAACCACATGGTGGGTCACAACCATCTGTAA
TGGGATCTGATGCCCTCTTCTGGTGTGTCAGAACACAGCTACAGTGGACT
AATATGCATAACATAAATATTTTTTTTAAAAAAAGATATGCTATAAATAA
CCTGATTATACAGAATAATCATGAAATTGATAATAAAATAAAATGCATGG
CATTCAGAAACTGCCATGATAGTAAAGAGTTAAAAAGAACCGGCATGGTC
AACACCTTTAATCCCAGCACTTGTGAGGTAGATGCAGGTTTATTTCTGAA
GTTGATGCCCGCCCGACCTACAAAGTGAGTTTCAGTTATGCCTAGTCTTA
AAGCTCTCCTCTACATACCTCGGTTGGTATAACTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_g01.g1 MSMg01no422_g01.g1 CHROMAT_FILE:
MSMg01no422_g01.g1 PHD_FILE: MSMg01no422_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:49 2005
         (253 letters)



>mm_chr3_146122292_146122944
          Length = 653

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacatgtgcgtgtcattattgagcaaatgttaaaagccaaatgagaaaaataataaaac 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaacatttgcgtgtcattattgagcaaatgttaaaagccaaatgagaaaaataataaaac 282

                                                                       
Query: 61  tgttagaaataaaagatataagtagaaaaaagaaaaaatgaactagaggacacaagccag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 281 tgttagaaataaaagatataagtagaaaaaagaaaaaatgaactagagaacacaagccag 222

                                                                       
Query: 121 cagcaatcttcaaaagctctggtttgggcatacatagtgagaccctgtctccaaaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cagcaatcttcaaaagctctggtttgggcatacatagtgagaccctgtctccaaaaagaa 162

                                                                       
Query: 181 aaaggaaaagaaaaagagaaaaaaagaactagaggagaaataaaagatatgctatggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aaaggaaaagaaaaagagaaaaaaagaactagaggagaaataaaagatatgctatggggc 102

                      
Query: 241 tggagagatgg 251
           |||||||||||
Sbjct: 101 tggagagatgg 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)