XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
GGTCTGCCTGGCTTTTCACCCAGCAGAGAACAATTTACAGATTGAGTTTA
CTTGAAAAAAAAATCTTATCTGTACAGCAGTTATTGACTGTGCTATCTTG
CTTTCCGTGATGTATGATTTCTTTTTGAGAAAGTCCCAGTGGCTGCAGAA
GATGTAGACATTGCCATTTAACTACTTCTTGCCCAGGGCCTGTGGGGTTT
GCATCTTTATTAATGATATCTTTATTAAGTTTTATTCTCAGTGTTATTGA
GGAAGATTTTAAGGTTTTGAGGTAAGTGCACTTTACTTCAAGTCTTTGTT
TACTGGAAACCTTTAACTCATCCACAGTATATTGAATATGTACCATGTGC
TAGGCACTACAAACTGGAGAAACAAAGGCCATAAAGAAATAAGTTACAGG
ATTGGAGAGTTGGATAAGAGCACTCACTACTTTTATGGAGGAACTGGTAT
TGGTTCCCATTACCCACATTGTGGCTTACTAACATTTATAATTCCATTCC
CAAGGGATCTGATGCCCTCTTCCCACCTCTTCAGGTACCTGACATGCATG
TAGTGCATACACATGACAGGAGATAAAACACTACATATGGAGAATTAATG
TAAGTAAATCAACATAATAAAAAGAAAGAATTTATAAACCATTACCTGAC
CTGACAAGAAAAGTAGTCCGCCTGACAACG

GTGAGGCCTGGNGGCGCCTGGTTTCATACTTAGGTGAACTATAGAAGGTT
TCCGAAATTCTCTGGGTGTCTTCTAGGGACTGGAGAAAGGCGCTTGAAGG
TTGAAGTTCCAAGGATATGACTGCATGTCAGTGTCACAGAGTGGGCATAC
AATCCGACAGTGTGGCCATCCAGTTTGACAGTGTGACCATCCAGTATGGC
AGTTTCGGTATCCAGTGTGACAGTGTGGACATCCAGTATGTTATTGTAGA
CATCCAGTGTGATAGTATGGTCATCCAATATGATAGTGTGGGCATCCAGT
GTGACTTTGTTGGCTTCCAATATGGCAGTGTGGGCATTCAGTGTCATATT
ATGGACATCGGGGTGACAGTGTGGTCATTCAGTATGGCTATGTGGGTATC
CATTGTGACCATTGGGCATCCAGAGTTGTACATGCTTCCTTTACTCGCCT
CTGAACTGCTTTTCTTGTTTGACCTCTTTTGTGATCTTCCCTCAATATGA
CAAGCTTAAGAAAATGAGGCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT
TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT
TTCCTTTTCCTTTCTTTTCTTTCCTTTTCTTTTTCCCTCCCTTTTTTTTT
TTTTTTTTCTCCTACTAATCTAACTCTCATCACAACCTCTATTCTCTTCA
TACTTTCCTATTTATCTCCATTTTTAAATTTTT

Query= MSMg01no422_g17.b1 MSMg01no422_g17.b1 CHROMAT_FILE:
MSMg01no422_g17.b1 PHD_FILE: MSMg01no422_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:52 2005
         (594 letters)



>mm_chr3_56755276_56756269
          Length = 994

 Score = 1125 bits (582), Expect = 0.0
 Identities = 588/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctggtctgcctggcttttcacccagcagagaacaatttacagattgagttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctggtctgcctggcttttcacccagcagagaacaatttacagattgagttta 264

                                                                       
Query: 65  cttgaaaaaaaaatcttatctgtacagcagttattgactgtgctatcttgctttccgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgaaaaaaaaatcttatctgtacagcagttattgactgtgctatcttgctttccgtga 324

                                                                       
Query: 125 tgtatgatttctttttgagaaagtcccagtggctgcagaagatgtagacattgccattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatgatttctttttgagaaagtcccagtggctgcagaagatgtagacattgccattta 384

                                                                       
Query: 185 actacttcttgcccagggcctgtggggtttgcatctttattaatgatatctttattaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actacttcttgcccagggcctgtggggtttgcatctttattaatgatatctttattaagt 444

                                                                       
Query: 245 tttattctcagtgttattgaggaagattttaaggttttgaggtaagtgcactttacttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttattctcagtgttattgaggaagattttaaggttttgaggtaagtgcactttacttca 504

                                                                       
Query: 305 agtctttgtttactggaaacctttaactcatccacagtatattgaatatgtaccatgtgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtctttgtttactggaaacctttaactcatccacagtatattgaatatgtaccatgtgc 564

                                                                       
Query: 365 taggcactacaaactggagaaacaaaggccataaagaaataagttacaggattggagagt 424
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taggcactacaaactggagacacaaaggccataaagaaataagttacaggattggagagt 624

                                                                       
Query: 425 tggataagagcactcactacttttatggaggaactggtattggttcccattacccacatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 tggataagagcactcactacttttatggaggaactggtattggttcccaatacccacatt 684

                                                                       
Query: 485 gtggcttactaacatttataattccattcccaagggatctgatgccctcttcccacctct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggcttactaacatttataattccattcccaagggatctgatgccctcttcccacctct 744

                                                             
Query: 545 tcaggtacctgacatgcatgtagtgcatacacatgacaggagataaaaca 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcaggtacctgacatgcatgtagtgcatacacatgacaggagataaaaca 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no422_g17.g1 MSMg01no422_g17.g1 CHROMAT_FILE:
MSMg01no422_g17.g1 PHD_FILE: MSMg01no422_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:52 2005
         (278 letters)



>mm_chr3_56893020_56893697
          Length = 678

 Score =  431 bits (223), Expect = e-125
 Identities = 256/267 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaatatggcagtgtgggcattcagtgtcatattatggacatcggggtgacagtgtggtc 60
           |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 404 ccaatatggcagtgtgggcattcagtgtcatagtatggacatcggtgtgacagtgtggac 345

                                                                       
Query: 61  attcagtatggctatgtgggtatccattgtgaccattgggcatccagagttgtacatgct 120
           |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 344 attcagtatgaccatgtgggtatccaatgtgaccattgggcatccagagttgtacatgct 285

                                                                       
Query: 121 tcctttactcgcctctgaactgcttttcttgtttgacctcttttgtgatcttccctcaat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 284 tcctttacttgcctctgaactgcttttcttgtttgacctcttttgtggtcgtccctcaat 225

                                                                       
Query: 181 atgacaagcttaagaaaatgaggctttcttttcttttcttttcttttcttttcttttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atgacaagcttaagaaaatgaggctttcttttcttttcttttcttttcttttcttttctt 165

                                      
Query: 241 ttcttttcttttcttttcttttctttt 267
           |||||| ||||||||| ||||||||||
Sbjct: 164 ttctttccttttctttccttttctttt 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)