This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-422G17
Chromosome
3 (Build37)
Map Location
56,755,480 - 56,893,423
singlet/doublet
doublet
Overlap gene
none
Upstream gene
LOC100040139
Downstream gene
LOC666585
,
Tm4sf1
,
LOC383862
,
Tm4sf4
,
Wwtr1
,
Commd2
,
Gm410
,
EG623114
,
Rnf13
,
LOC675537
,
Pfn2
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100040139
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040139
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
LOC666585
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666585
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins
pseudo
: _no_value
name
Tm4sf1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17112
MGI:104678
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC383862
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:383862
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins
pseudo
: _no_value
name
Tm4sf4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:229302
MGI:2385173
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Wwtr1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:97064
MGI:1917649
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Commd2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:52245
MGI:1098806
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gm410
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:242037
MGI:2685256
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG623114
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:623114
MGI:3648319
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 740 ESTs
name
Rnf13
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:24017
MGI:1346341
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC675537
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:675537
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 162 ESTs, 9 Proteins
pseudo
: _no_value
name
Pfn2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18645
MGI:97550
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tm4sf1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:88900519
GeneID:17112
MGI:104678
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane 4 superfamily member 1
transcript_id
: NM_008536.3
name
Tm4sf4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21704061
GeneID:229302
MGI:2385173
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane 4 superfamily member 4
transcript_id
: NM_145539.1
name
Wwtr1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:84370279
GeneID:97064
MGI:1917649
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: WW domain containing transcription regulator 1
transcript_id
: NM_133784.2
name
Commd2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802801
GeneID:52245
MGI:1098806
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: COMM domain containing 2
transcript_id
: NM_175095.4
name
Gm410
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142371783
GeneID:242037
MGI:2685256
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gene model 410, (NCBI)
transcript_id
: NM_001033349.2
name
EG623114
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149251159
GeneID:623114
MGI:3648319
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 740 ESTs
product
: predicted gene, EG623114
transcript_id
: XM_887553.3
name
Rnf13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:86439981
GeneID:24017
MGI:1346341
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ring finger protein 13
transcript_id
: NM_011883.2
name
Pfn2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31980876
GeneID:18645
MGI:97550
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: profilin 2
transcript_id
: NM_019410.2
name
Tm4sf1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678762
GeneID:17112
MGI:104678
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
note
: membrane component, surface marker 1; L6 antigen; 12A8 target antigen
product
: transmembrane 4 superfamily member 1
protein_id
: NP_032562.1
name
Tm4sf4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21704062
CCDS:CCDS17361.1
GeneID:229302
MGI:2385173
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: transmembrane 4 superfamily member 4
protein_id
: NP_663514.1
name
Wwtr1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84370280
GeneID:97064
MGI:1917649
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0003713 - transcription coactivator activity [Evidence IGI] [Evidence IMP]; GO:0003714 - transcription corepressor activity [Evidence IGI]; GO:0030528 - transcription regulator activity [Evidence IDA]
GO_process
: GO:0045599 - negative regulation of fat cell differentiation [Evidence IGI]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0001649 - osteoblast differentiation [Evidence IGI] [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: transcriptional coactivator with PDZ binding motif
product
: WW domain containing transcription regulator 1
protein_id
: NP_598545.2
name
Commd2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110626003
CCDS:CCDS17362.1
GeneID:52245
MGI:1098806
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: COMM domain containing 2
protein_id
: NP_780304.2
name
Gm410
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85701850
CCDS:CCDS17363.1
GeneID:242037
MGI:2685256
definition
codon_start
: 1
product
: hypothetical protein LOC242037
protein_id
: NP_001028521.1
name
EG623114
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82889586
GeneID:623114
MGI:3648319
definition
codon_start
: 1
product
: similar to Ribosomal protein S11
protein_id
: XP_892646.1
name
Rnf13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755338
GeneID:24017
MGI:1346341
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: ring finger protein 13
protein_id
: NP_036013.1
name
Pfn2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:9506971
CCDS:CCDS17364.1
GeneID:18645
MGI:97550
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]
GO_function
: GO:0003779 - actin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]
codon_start
: 1
note
: profilin II
product
: profilin 2
protein_id
: NP_062283.1
name
LOC100040139
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040139
definition
number
: 1
pseudo
: _no_value
name
LOC666585
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251157
GeneID:666585
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins
product
: hypothetical LOC666585
pseudo
: _no_value
transcript_id
: XR_031577.1
name
LOC383862
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251158
GeneID:383862
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins
product
: similar to fructose-1,6-bisphosphate aldolase A
pseudo
: _no_value
transcript_id
: XR_031586.1
name
LOC675537
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251164
GeneID:675537
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 162 ESTs, 9 Proteins
product
: similar to hCG2028724
pseudo
: _no_value
transcript_id
: XR_031768.1
clone name
MSMg01-400A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-206L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-174B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-496D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-524H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411C11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-374D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-138B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294G07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306P14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306L08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242I03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120O05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-306K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-263I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-275N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-272B14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-324N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-136B24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-069G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322D09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023D23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-038L23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034N17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270N06
singlet/doublet
doublet
plural/unique
unique
clone name
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