BAC Information

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BAC

Clone NameMSMg01-422I18
Chromosome3 (Build37)
Map Location 89,770,661 - 89,771,162
singlet/doubletsinglet
Overlap geneLOC668102
Upstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2
Downstream geneHax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I18.T7 (MSMg01no422_i18.b1)MSMg01-422I18.TJ (MSMg01no422_i18.g1)
ACCAG516910AG516911
length708709
length of high quality
(start - end)		501 (67 - 567)215 (370 - 584)
definitionCHROMAT_FILE: MSMg01no422_i18.b1 PHD_FILE: MSMg01no422_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:01 2005CHROMAT_FILE: MSMg01no422_i18.g1 PHD_FILE: MSMg01no422_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTC
AGGACCTTTCATCACTCCGGCCCCACTCGCTCCAGCCCCAAGATTTTTAT
TTATCATTATATGTAAGTACACTGTAGCTGTCTTCAGTCCCAACAGTAGA
GGGCGTCAGATCTCATTTTGGATGCTTTGAACTCAGGACTGCTAAACCAT
CTCTCCAGCCCAGCCTGCTCTTAATACATGTATTAGAGTGCTAAGGTTGG
GCCACCAGACAGTGTGCTGCAGGGGAGGCACTCCTTTTCAGGCATATTTT
TTTGGAGGAGTGGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT
CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCC
TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCTG
GCTTCAGGGCTTCAGGCTCATATTTTGGTTTCACTGTATGATCCTGTGAT
CTTGGTAAATCACCTTTTTTTTTAAGATTTATTTTTTTAATTTATTTTAT
TATATGTAAGTACACTCAGACTCTCTAGAAGAGGGCGTCAGATCTTGTTA
CGGATGGTTGTGAGCCACTATGCGGTGGCTGGGATTTGAACTCCTGACCT
TTTGGGTACCAAAGGGCCCTTGATTCTAGTACTTTTGGATTAACTATCAG
TGTTTTTT

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXGTTCAGTACCTGGGGNNGAAC
TATAGAAGGTTACGCAAAATTCTTCTAACAGAGNAAAAAGAGAAGACAGT
TGGTGACAGCTGAGCCAGGACAAGCTGAGCTGAGCAGATAGGCTAGAACA
GTTGCTATAGTTTGGAGTTGCCAGTACTGAGAAAACTGAGAGAAGGGATT
CTTTAAGCATACTGTTGGTGAACTGAGGGAGGAAGGGCTGGGAGAAACCT
TTGAAGGGGCCGAGTGATTAAACCAGGACGAGGGCTTATAAATTTCTGCT
CAGTGGAAGGGTATTTACCTGTTTTCTGAAGCCCAGGAACTGCACAGCTC
TGATGTGTTGTAGTGCCTCAAGGGCAGGGCATCCCGAGACATGGGAGTCC
AGGAGCCACACAGCTCTGAGATTCCTGAAGCCTTCTCAGCAGAGACACTG
CAGCTCTCAGGGGAGGGTATCCCAGCTGAGCTGAAGAGATCAGGAAGCTG
AGCCCCCTCCCCTGCTTTAATTCTTCCCTTCTCTTCATCGCTTCTTGGCT
TATAAGAGTCACACCAGGCAGCATATCTCATGAAGGGATTGGAGAGATGA
ATCCCGGAGAAGGAAGGACAATTCCAGGGGTGGCTTCTGGAAATGTACTT
TTTTTGTTTGAACAATGGGCAGGGCTTATATAGGATTTCTCAGGCGCATA
GAATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i18.b1 MSMg01no422_i18.b1 CHROMAT_FILE:
MSMg01no422_i18.b1 PHD_FILE: MSMg01no422_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:01 2005
         (501 letters)



>mm_chr3_89770600_89771500
          Length = 901

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%), Gaps = 1/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccggccccactcgctccagccccaagatttttatttatcattatatgtaagtacactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccggccccactcgctccagccccaagatttttatttatcattatatgtaagtacactgta 504

                                                                       
Query: 61  gctgtcttcagtcccaacagtagagggcgtcagatctcattttggatgctttgaactcag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctgtcttcagtcccaccagtagagggcgtcagatctcattttggatgctttgaactcag 444

                                                                       
Query: 121 gactgctaaaccatctctccagcccagcctgctcttaatacatgtattagagtgctaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gactgctaaaccatctctccagcccagcctgctcttaatacatgtattagagtgctaagg 384

                                                                       
Query: 181 ttgggccaccagacagtgtgctgcaggggaggcactccttttcaggcatatttttttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgggccaccagacagtgtgctgcaggggaggcactccttttcaggcatatttttttgga 324

                                                                       
Query: 241 ggagtggtttttgagacagggtttctctgtgtagccctggctgtcctggaactcactttg 300
           |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagtggggttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttg 264

                                                                       
Query: 301 tagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgctgggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgctgggat 204

                                                                       
Query: 361 taaaggcgtgtgccaccacgcctggcttcagggcttcaggctcatattttggtttcactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taaaggcgtgtgccaccacgcctggcttcagggcttcaggctcatattttggtttcactg 144

                                                                       
Query: 421 tatgatcctgtgatcttggtaaatcacc-tttttttttaagatttatttttttaatttat 479
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 143 tatgatcctgtgatcttggtaaatcaccttttttttttaagatttatttttttaatttat 84

                                 
Query: 480 tttattatatgtaagtacactc 501
           ||||||||||||||||||||||
Sbjct: 83  tttattatatgtaagtacactc 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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