BAC Information

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BAC

Clone NameMSMg01-423B04
Chromosome3 (Build37)
Map Location 92,627,280 - 92,627,786
singlet/doubletsinglet
Overlap geneKprp
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101
Downstream geneLce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B04.T7 (MSMg01no423_b04.b1)MSMg01-423B04.TJ (MSMg01no423_b04.g1)
ACCAG517314AG517315
length733729
length of high quality
(start - end)
522 (40 - 561)507 (69 - 575)
definitionCHROMAT_FILE: MSMg01no423_b04.b1 PHD_FILE: MSMg01no423_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:40 2005CHROMAT_FILE: MSMg01no423_b04.g1 PHD_FILE: MSMg01no423_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTAAGGAGCAATAAGGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCTGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CATACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCT
GTTGAGGATGTGGGGAAAGATGAACACTCCTTCATTACTGGTGGGATTGC
AAGCTGGTACAAACACTCTGGAAATCATTTTGGCAGTTAATCAGAAAATT
GGACATAATACTACTGGAAGATCCAGCAATACATCATATACCCAGAAGAT
GTTCCAATTTGAAATAATTGACACATGCTCCACTATGTTCATAGCAGCCT
TATTTATAATAGCCAGAAGCTGGAATGAACCCAGATGTCTCTCAACAGAA
GAATGGATACAGAAAATATGGTACATTTACAAAATGGAGTACTATTCAGC
TATTAAAAACAATGACTTTATGAAATTCTTAGGCAAATGGATGGATCTGG
AGGAAATCATCCTGAATGGATTAACCCAATCACAAAAGAACGTACATGAT
ATGCACTCACTGATAAGTGTATATTAGCTCAGCAGCTTAGAATACCCAAG
ATACAATTTCTCAAACACATGAATTCCGGAAAAAAGATAAACCCGTGGAA
ACTTTTGCTCCCCTCTTTTGTCTGGGAAAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAAGAAGTCTGAAGAGGCTCTATGGGTAGAAA
CAGACCACCACAACAAAAGGATTCAAGGAGGAGTTATTGAAAGGCAGGTA
CAATTTTGGATCCTGAGAAATAGATGAGAAATGGTTCAGGCTGAGGACAC
CTCTGCAGAGGCAAGAGCATCTGGGGACTGTCAGGAGGAACACCCAAGGA
ATGTACTTGTGGCCAAGCTGGTCTAGTTATTAAAGCTGTGTGCAGAGGAG
GAATGAGACATAAGACTGGAATGATGTCAGAGACTCAGGTGCAGAACCTG
AGATGACATGCAAGGAATTTGGATAACAACTTTGAAGCAGGGAGAATCAC
AATGTCTGTGGAAATAATGAACCATATAAGAATGGGAAATACTCTAAAGA
ACCTAATACATTTAGGCTATACTTTTGTTTAAAAGTAGGCTCCCTTTGCT
CCACCATAAGCCCCACAGTTCATGCCACCACAGGTATTTCCTTGGTCTCC
ACAACCACTTAGACCGTGTGATCCTGANNAGACATCACCAGATTCACAGC
TGCCATTACTCTCTTGCCTTTGGGTGAAGTTATATGAGCCACAGCGCGGG
GCCTTCGGTATTCAGGCGACATGTTTTAGATTCATGACAGCTTATTCCTT
GGCGGTAAGGTATTGTATTGCGACCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b04.g1 MSMg01no423_b04.g1 CHROMAT_FILE:
MSMg01no423_b04.g1 PHD_FILE: MSMg01no423_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:40 2005
         (507 letters)



>mm_chr3_92627080_92627986
          Length = 907

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagaagtctgaagaggctctatgggtagaaacagaccaccacaacaaaaggattcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaagtctgaagaggctctatgggtagaaacagaccaccacaacaaaaggattcaagg 260

                                                                       
Query: 61  aggagttattgaaaggcaggtacaattttggatcctgagaaatagatgagaaatggttca 120
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 261 aggagttattgaaaggcaggtacaattttggatcctgggaaacagatgagaaatggttca 320

                                                                       
Query: 121 ggctgaggacacctctgcagaggcaagagcatctggggactgtcaggaggaacacccaag 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggctgaggacacctctgcagaggcaagagcatctggggactgtcgggaggaacacccaag 380

                                                                       
Query: 181 gaatgtacttgtggccaagctggtctagttattaaagctgtgtgcagaggaggaatgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgtacttgtggccaagctggtctagttattaaagctgtgtgcagaggaggaatgaga 440

                                                                       
Query: 241 cataagactggaatgatgtcagagactcaggtgcagaacctgagatgacatgcaaggaat 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaggctggaatgatgtcagagactcaggtgcagaacctgagatgacatgcaaggaat 500

                                                                       
Query: 301 ttggataacaactttgaagcagggagaatcacaatgtctgtggaaataatgaaccatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggataacaactttgaagcagggagaatcacaatgtctgtggaaataatgaaccatata 560

                                                                       
Query: 361 agaatgggaaatactctaaagaacctaatacatttaggctatacttttgtttaaaagtag 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatgggaaacactctaaagaacctaatacatttaggctatacttttgtttaaaagtag 620

                                                                       
Query: 421 gctccctttgctccaccataagccccacagttcatgccaccacaggtatttccttggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctccctttgctccaccataagccccacagttcatgccaccacaggtatttccttggtct 680

                                      
Query: 481 ccacaaccacttagaccgtgtgatcct 507
           |||||||||||||||||||||||||||
Sbjct: 681 ccacaaccacttagaccgtgtgatcct 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)