BAC Information

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BAC

Clone NameMSMg01-423B22
Chromosome3 (Build37)
Map Location 75,824,108 - 75,824,567
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneFstl5, LOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B22.T7 (MSMg01no423_b22.b1)MSMg01-423B22.TJ (MSMg01no423_b22.g1)
ACCAG517350AG517351
length760774
length of high quality
(start - end)		477 (28 - 504)527 (60 - 586)
definitionCHROMAT_FILE: MSMg01no423_b22.b1 PHD_FILE: MSMg01no423_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:43 2005CHROMAT_FILE: MSMg01no423_b22.g1 PHD_FILE: MSMg01no423_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCTTGATTCTCAG
CTCTTGAGACATTTCAATGAGATCCCTTTCTCCTCATGAACCCTTATTTT
CTCTGCCTTTTCTTTCTTTTGCACTGAGCACGTTGAATCTATAAGCCAAT
ATTTATCTAAAAATTGAAAACTATATAATAATTACCCATGCAATTATTTT
ATTTTCTCAGTTCTTTTACATCCTTTTGCTACTTGATTTACCTGGATAAA
TGACTTAGTAAAATGATCTAAAACTTAAGGAAGAACTTAGAGGGCATGAG
AGCATTTTACTCATATTTCAAAATTGGTGAAACCAGGAATGTTAAATGCA
TGGGATTGTCTTCTCAATGGAGGAACTAAGATACCAGCATTTCTCCCAGA
AAGCTGGGGGTCGATGTTACTAATGACCTGGTGGCTTCCACTATCTGTAG
AATCCAACTTCATCAAAATCACCCAGAATGATTATCCCAGACTCTCCCTA
AAGTCTAGAAAGACTTTCCCAGTTTATAGAACCCTTCCTTAGGGAAGATA
TTGCCTGTACTTCATAGCTGTCTGACCTCTATGCCACACCAGAAGCTAGA
CCTCTAAGCTATAGGAACATCTTCTTGGCCCATGGACTTTGCTAAGGATT
TCTATGGAACACTGTGGGAACCCCAATGGGCACCTGAAATGCAAAGATAT
GTGCCCGGAAAACCCTTCCCAAAGATAGTGGTAAAAAATTTCGCCAAATC
CCCACCCCTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAA
CCCTACGATACCCCAAATATTAGATATTAATTTGCTTAACACATGAAAAC
TCCCCAAGAATGAAGAACAGAGGGGGGGGAACTATTGCCCCCCTTAAAAT
TGGGAAAAAAACCCCACGGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b22.b1 MSMg01no423_b22.b1 CHROMAT_FILE:
MSMg01no423_b22.b1 PHD_FILE: MSMg01no423_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:43 2005
         (477 letters)



>mm_chr3_75824108_75824984
          Length = 877

 Score =  828 bits (428), Expect = 0.0
 Identities = 452/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcttgattctcagctcttgagacatttcaatgagatccctttctcctcatgaacc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggaattcttgattctcagctcttgagacatttcaatgagatccctttctcctcatgaacc 401

                                                                       
Query: 66  cttattttctctgccttttctttcttttgcactgagcacgttgaatctataagccaatat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cttattttctctgccttttctttcttttgcactgagcacgttgaatctataagccaatat 341

                                                                       
Query: 126 ttatctaaaaattgaaaactatataataattacccatgcaattattttattttctcagtt 185
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 340 ttatctaaaaatggaaaactatataataattactcatgcaattattttattttctcagtt 281

                                                                       
Query: 186 cttttacatccttttgctacttgatttacctggataaatgacttagtaaaatgatctaaa 245
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cttttacatctttttgctacttgatttacctggataaatgacttagtaaaatgatctaaa 221

                                                                       
Query: 246 acttaaggaagaacttagagggcatgagagcattttactcatatttcaaaattggtgaaa 305
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 220 acttaaggaagaacttagagggtatgagagtattttactcatatttcaaaattggtgaaa 161

                                                                       
Query: 306 ccaggaatgttaaatgcatgggattgtcttctcaatggaggaactaagataccagcattt 365
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 160 ccaggaatgttaaatgcatgggagtgtcttctcaatggaggaactaagataccagcatgt 101

                                                                       
Query: 366 ctcccagaaagctgggggtcgatgttactaatgacctggtggcttccactatctgtagaa 425
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 100 ctcccagaaagctgggggtcgatgttactaatgacctggtggcttgcactatctgtagaa 41

                                                   
Query: 426 tccaacttcatcaaaatcacccagaatgattatcccagac 465
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  tccaacttcatcaaaatcacccagaatgattatcccagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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